Syngnathoides biaculeatus (alligator pipefish): 133509572
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Entry
133509572 CDS
T09681
Symbol
tarbp1
Name
(RefSeq) probable methyltransferase TARBP1 isoform X1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbia03016
]
133509572 (tarbp1)
03036 Chromosome and associated proteins [BR:
sbia03036
]
133509572 (tarbp1)
Enzymes [BR:
sbia01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
133509572 (tarbp1)
Transfer RNA biogenesis [BR:
sbia03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
133509572 (tarbp1)
Chromosome and associated proteins [BR:
sbia03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
133509572 (tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
133509572
NCBI-ProteinID:
XP_061692707
LinkDB
All DBs
Position
12:14658847..14677671
Genome browser
AA seq
1579 aa
AA seq
DB search
MNSVLINAVLSNFPNYELLFDTLCWPADVWPETDRVEALTSFVEGLEQFFVQSETSPSTT
AKRQFIRDKSQSIIWTHCLPLLSRISAQTEGARCRESTAAVCRLVAACVRLGGSAAAGQA
ALAVLPSLRLFEEERPSGGTLSVEVASEVLAALFPSLTGDELLTSNILSCILSGFRTFTD
GSLTRVTVRLMLALLGSCDYAKIGTILSKTLSELCTWHASERTPAVTERALLCFTALSDH
LLGSTDPDPRSCLLFWWVLQDGLIHSDSVSRKRALYLLKRCVALSQEQGLDCPSRQVSGE
EVLFKWQAKCSKMLREFWEDYVLVMETLEENQVHVVRPVLNRVDSLIQTTANKGQDLFHP
SWLLCVYQRMFHSENKTLMRAGVCHLLDLQILHQPAFASAFSQFVVGPFMDVLSEMSLFS
MAASQRVGDCPDLAVKLQTFLKNFFSILPREDQGRVLLLLIQQLGSKHWCAVPLLFISQA
LSKLDPSPILALDGLTAFREVLRCTMITHQVLLRGAAQCFLLRSALCLMDVNRVTLDDVF
TFLGNFRADESLCRGTALWNEVCDWLSSNEGSFKTSDDGVTSSKETIKVYVHGKLHEFLR
VPACTGQTESLPDTKEADMLARSIMLWTDIEGSQPGAKIADSLHLLMSPIMDTLSRVGSN
IYMPERKSDKSLQLVLRLLQLRETQKEHGDEVTTALEGLIFQFIDSIQEFILRRLCGELQ
ELCDVERAQLYLCVLKQLAMHSCKIQQDSFPKLIKYSLNVLKEPPQQIPSVGSQVVRAVA
MASLAMVCQLLEQQEIGLETLSLLKQLNEHFYKPVPFPWQSHSTLGRFNERLLKPQTTDS
SGNESFQGLLRDWGRTAAHFMRDQWICLSFLTKTLGFQDFELPKNKETVIAALSCCVDAL
ALLPSDLVLPVLAFMETALPQLVHEDESLCVEAVSQCWELVHGLSNNAHDFWPALKGFIS
VAFHQKLLLLTDSQAPVLTKTVKQIAVEIMEFSESKNGVFSVLLEHCCQTWLPASEQSRN
PDDNNFSSVFSYINIMAEGCIYGPVFRRDQRLVQDVQAYVEQLGELCAANAVVTSDNRDD
QLPRMYTLAFLSRLDVSNLLHEQLMEQLVVILLKKDKNMSKSVRISSNSLQHRVKNRIWQ
TVLMMLPKFKEGFVASILSSVFEAGFCSNQASVKYMIEWTMILILVHYPKYIDSFWACFN
MHHEGTKTGICTFFAVLVHFSVIIPKLQDPDIHLGKALDISLQWCFHHNFSVRLYALLAL
KRVWSLVEVRGEKTVEGLRALSTVVKACLHQTEALKNTGNANKNWTRIQEHFFFGTFHPI
RDYSIETIFYTFPSLSGLADDEWILPLKFKKLSGFSQTPPLRNTTPDLSQLQPGDWIQQD
KSEEDNEERWAEVQKKITPWRLDILEQDLELQLVPLQRAARLGKQHSALLVVASLIDKPT
NLGGLCRTCEIFGASALALDNLRHITDKHFQSLSVSSELWLPLLEVKPLELTDFLQLKKS
EGYCIVGVEQTANSQSLQDYQFLEKTLLLLGNEREGIPANLLQLLDVCVEIPQQGVIRSL
NVHVSAALLIWEYTRQRVK
NT seq
4740 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgttttaatcaacgcagtattgtctaatttccccaactacgagcttctgttt
gacactctgtgctggccagctgacgtgtggccggagacggaccgtgtcgaggcgctgaca
tcttttgtcgaaggactcgagcaatttttcgtccaatcagaaacaagtccatcgacaacc
gcgaaaagacaatttatacgagataaaagccagtctatcatttggacgcattgtctccct
cttctctcccgaatatcagcacaaacggagggggcgcgctgtcgggagagcacagcagct
gtgtgcagacttgtggccgcctgtgtccggttaggtggctctgctgctgctggccaagcc
gctctggccgtcctgccttcgctgcggctgttcgaggaggaacggcccagcggagggaca
ctgagcgtggaggttgccagtgaagtcctggctgccctgtttccgtctttaacaggagac
gagctgctcacgtcgaacatcttgtcatgtatcttgtcgggctttagaacttttacagac
gggtcgctcacccgggtcactgtcaggctcatgctagccctgctgggctcttgcgattat
gctaaaatcggcaccattctcagcaagactttgagcgaactgtgtacctggcatgcctcg
gagcgcacacccgccgtaactgagcgagccctgctgtgtttcaccgccctgtcagaccac
ctgttgggatccactgatccagaccctcgttcctgtctcctcttctggtgggtgctccag
gacggactcatccacagtgatagcgtgtcccgaaagagagcactgtacctgctcaaaagg
tgtgtggcattgtcacaagagcaaggattggattgtccttcacgacaagtgagtggtgag
gaggtcctgttcaaatggcaagccaaatgcagtaaaatgctcagagagttctgggaggat
tatgtactggtgatggaaaccttggaggaaaatcaggtccatgttgtccgcccagttctg
aacagagtggactctcttatccaaactacagcaaataaaggtcaggacctctttcaccca
tcgtggctgctgtgtgtgtaccaacggatgttccacagtgagaataaaacgttaatgcga
gcaggtgtgtgtcacctgttggaccttcaaatcctccaccagccagcctttgcgtcagca
ttttctcagtttgttgtcggacctttcatggatgttctgtcagaaatgtcactcttctcc
atggcagcgagccagcgtgttggagactgtcccgatctggcagttaaactccaaaccttt
ttgaagaacttcttcagcattctgccaagagaggaccaagggcgcgtgctgctgcttctg
atccagcagcttggttcaaagcattggtgtgcagtgcccctcctcttcatctctcaggcc
ctgtcaaaacttgatccgagcccaatattggcgctcgatgggcttactgccttcagggag
gtactgcgctgcacgatgattacacatcaagtcctcctgagaggtgctgcccagtgcttc
ttattgaggagcgccctctgtctcatggatgtgaacagagtgaccctcgatgacgtcttt
accttcctgggcaatttccgagccgatgagtcgctttgtcgaggcacagcactttggaat
gaggtgtgtgactggctctcaagcaatgagggcagctttaagacaagtgatgatggtgtt
acctctagcaaggaaaccataaaagtgtatgttcatggcaaactacatgagtttctaaga
gttccagcatgcactggccagacagagagtttacctgacaccaaagaggctgacatgttg
gctaggtccattatgctatggactgacattgaggggagtcaacctggagctaagattgct
gacagcctacatttgttaatgtctcctatcatggacactttgagtcgggttggtagcaac
atctacatgcctgaaaggaagagtgacaaaagcttgcaactcgtcctccgactgctccag
cttagagaaacacagaaggaacatggggatgaagtgaccactgctttggaggggctcatt
ttccagtttatagattcaattcaggagttcatcttgaggcgtctgtgtggggaactgcaa
gagttgtgtgatgtggagcgggcgcagctctatttgtgtgtcttgaagcagctggccatg
cacagctgtaaaattcaacaagattccttcccgaaactcattaagtacagtctgaatgtc
ctgaaagaaccaccccagcagatcccctcagtgggtagtcaggtggtcagagcagttgct
atggcatctcttgccatggtatgtcagctattggagcagcaagaaattggcctggaaacg
ctttctcttctaaaacaactgaacgagcacttctacaagccagtgccgtttccttggcaa
agtcattcaactttgggtcgcttcaatgagaggctacttaaacctcagacaacagacagt
tcgggtaacgaaagtttccagggtcttctgcgagactggggtcgcacagctgcccacttc
atgcgagaccagtggatttgcctgagtttcctcaccaaaacactcgggtttcaggatttc
gagctccccaaaaacaaagagactgtcatagcagctctgagctgctgcgtggatgctctc
gctcttctgcccagcgacctggtgctgccggttctcgccttcatggagacggcgctacca
caattagtacatgaagatgaatccctctgtgtggaagctgtgagtcagtgctgggagcta
gtccatgggctcagcaataatgcccatgacttttggcctgccctaaaaggcttcatctca
gtggccttccaccaaaagctgctgttgctcacagacagtcaggccccagtcctgacaaaa
accgtgaaacagattgctgttgagatcatggagttttctgagtccaagaatggagttttt
agtgtgctgctggaacactgttgtcaaacgtggttgcctgctagtgaacaaagcaggaac
ccagatgacaacaatttctccagtgtctttagttatattaacatcatggctgagggctgc
atttatggccctgtgttcaggagagatcagcggcttgttcaagatgtccaggcatatgtg
gagcaacttggtgagctatgtgccgccaacgccgtggtcaccagtgacaacagagatgac
caactacctcgcatgtacacactggcttttcttagtcggctggatgtttctaaccttctg
cacgaacaactgatggagcagcttgttgtcattcttttaaaaaaggacaaaaacatgtca
aagtcagtacgtatctccagtaactctctacaacatcgcgtgaaaaacagaatatggcag
acagtgttaatgatgctccccaaattcaaagaggggtttgtggcctctatactgagcagt
gtctttgaggctggcttctgcagtaaccaggcttcagtcaagtacatgattgagtggaca
atgattctgatccttgtccattatcccaaatatattgacagcttttgggcatgcttcaac
atgcatcatgaaggaaccaagactggcatctgtaccttctttgcagtcctcgtgcatttc
tctgtcatcattcccaaacttcaggatccagatatacatttgggaaaggcacttgacatc
agccttcagtggtgtttccaccataacttcagtgttcgtctgtatgccctgctggcctta
aagcgtgtttggagtttggtggaagtcagaggagagaaaactgttgaaggtctgagggcg
ctgtccactgtcgtcaaggcctgtctccaccagactgaggccttgaagaacacggggaat
gccaacaagaactggaccaggattcaagagcacttcttctttggtacctttcatccaatc
agagattacagcattgagacaatattctacacttttccaagtctgtcagggttggctgat
gatgagtggatacttcctttgaagtttaagaagctgtcaggcttttctcaaacacctcct
ttgaggaatactactcccgaccttagccagctccagcccggagactggatccagcaggat
aaaagtgaggaggacaacgaggagcggtgggctgaggtgcagaagaaaataaccccctgg
aggttggacatcttggagcaggacctcgagcttcaactggttcctctgcagagagcagct
cgcctgggcaagcaacatagcgcgctgctggtggtcgcctcactcatcgacaagccaaca
aaccttggaggtctgtgccggacctgtgagatctttggtgccagtgcgttggcgctagac
aacctccgtcacatcactgacaaacactttcagtccctcagtgtctcatctgaactttgg
cttcctctcctggaggtaaagccgttggagctcacggactttctgcaattgaagaagagt
gagggctactgcattgtcggtgtggagcagactgctaacagtcagagccttcaggactac
cagtttcttgaaaagactctgctacttcttggtaacgaacgagaaggcatccccgccaac
ttgcttcagctgctggacgtgtgtgtggagatccctcagcaaggggtcatccgctcactc
aacgtacatgtgagcgccgccctgctgatctgggagtacactcgccaacgcgtgaagtga
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integrated database retrieval system
