Syngnathoides biaculeatus (alligator pipefish): 133509915
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Entry
133509915 CDS
T09681
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133509915 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sbia04131
]
133509915 (vps8)
Membrane trafficking [BR:
sbia04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
133509915 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_Vps41
Clathrin
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
TPR_VPS8_2
zf-RING_Vps41
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_5
zf-RING_UBOX
TAN
Beta-prop_EML_2
zf-C3H2C3
Beta-prop_WDR5
zf-RING_2
zf-C3HC4
Beta-prop_NWD2_C
EIF3I
Motif
Other DBs
NCBI-GeneID:
133509915
NCBI-ProteinID:
XP_061693391
LinkDB
All DBs
Position
12:28763353..28999316
Genome browser
AA seq
1378 aa
AA seq
DB search
MSEPLDACSLFSSLSKLELMDQEVIDDKEFDIPQVCTPPTLESILSELDDEDEPFVLEDA
CVLNTENIDAHSCDTASLASSDSGDPTHFKRKKRPVELKATVQGSVLQNSRLQGISAQII
SAADKVDAGLPTAITVAGVIVVGTSHGLALVFDNNQALRLCFGTKTTGEEFGAISALSIN
NDSSRLLCGFAKGQMTMWDLANGKLLRTISDAHPPGAAILHVKFTDDPTLAVCSDSGGSV
FELAFRRVMGMRSCDSRCLFSGSKGEVCCIEPLRASPDFSDHPITHYSLLAFGSLTKILV
IGLKPSLKVWMTFPYSKSDPSSVPQLAWQFVSEKSAVNPFLAFCKGDTVHLLMIKKEMGA
IHVIKQRHIHLSCDIISLNWINDSTLVLVDSHEKLLVVDHPSQEILEVLDLEQVQLVYNT
RHFKSLATGGNVSQALAFVGEKACYQSISRYGGHIVCLGTKSAHSVTLRTWRERIDLMLK
QDHFVEALSLAWSFHEGTAKAVVGLCGEPLKRKGIVGDKMVEILFQFADHTFKMCPEQGR
IQVMEQHFHDVIPILIDFCLLLQRPDLLFDQLYAQLAENLVAKGVFLELLESYIATNHLG
HLPTTVLKDLLAHYNSKGLMDNLERCIVHLDVTSLDIQQVVQVCWENQLYDAMIYVYNSG
MNDYITPMEKLFSVIGPPLREGKSLTTEEVVMGNKLLVYISCCLAGRAYPLGNIPEDLVV
QIKIQVFEYLILLHNGESSSDAYPLIQILLHFDTREFLNVLSMTFEDLNDKQAIEYQQRI
VDILLQVMVDNTDFTPCQVGGLFTFLARQLSKPDNTLFVNRKLFDQVLEFLCRSGDASRH
TERQQVLLQLLQVGGVVQFDEEKLLTLAQRAKFYQILEFLYEKKHMYDKTIDCYLKDPLR
KEEIFSYIHQLMSVASRSSEEKQGIKNKTLEHIQELIILDQRKSADLVLCHLIEEVDQIV
CKLQDGVPLLQFLSSFLEIWEHQYPGMILPTEHKLQKHLLDLLCRFAPQELLNFLQTSEQ
YRLEDAMQITEKYHHSYATGYLLEKKGDFYGAFTVLLEAVKAEISQLTADPTSAQSEDEK
ENESALLRRVEHSLNNLVALGHRNAQKIQQSQIKELWISLLGTLMTPQKQVLKDLTVNVL
NSMSTLVSLPAIIQQILKNPIYETGKFAEIQVLILGMLDTFRYEQTLFETTTSLLNHDLH
WSLSHLRTAVRRGLHPRQDSCNICLQQYKRWQDSAEQIVLFSCGHLYHVQCLQQTVDCGL
PCTSEQQQQWSCYKCSTTHRERGPQYTMPKSHCTSLAQARILSMHCDEARWKKEGRLDIQ
QEQSWDQLHCLYKGPSRLSILAELSHHHHNKRTGIIFQGHPAQEGFSLKLSPPPVLEE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaacccttggacgcttgcagtttattctcttccctttcgaaactcgagctaatg
gatcaggaagtgattgacgataaggaattcgacattccccaagtatgcacacctcccacc
ttggagagcatcctcagtgagctggatgatgaggatgaaccatttgtgcttgaggatgcc
tgtgtgctgaatactgaaaatattgatgctcattcctgtgatactgcttctcttgccagc
tctgacagcggagacccaactcactttaaacggaagaagaggccagtggaattgaaagca
acagttcaaggatcagttctacagaacagcaggcttcagggcatctctgcacagatcatc
tcagctgctgacaaagttgatgctggattaccaactgccataacagttgcaggtgtgatt
gttgtgggaacatctcatggtctggctctggtttttgataacaaccaagccttaaggttg
tgttttggaacaaaaacaactggcgaagagtttggcgcaatctctgccctcagcatcaac
aatgactcctcgagacttctctgtgggttcgcaaaaggacagatgaccatgtgggatctt
gccaatgggaaacttctgagaacaatctctgacgcacatcctccaggagcagcaattctg
catgtgaagttcacagacgacccaactcttgccgtgtgcagcgatagtggtggttccgtt
tttgagctggctttcagaagagtaatgggcatgcgttcttgtgactcaagatgtctcttc
agtggttccaaaggggaagtctgctgtattgaaccattgcgtgcatctccagacttcagc
gaccacccaataacacattattctctattggctttcggttccctcacaaagattttggtg
attggtctaaagccctccctcaaagtttggatgacttttccctacagcaagtctgatcca
tccagtgtaccacagctggcatggcagtttgtctctgagaaatcggctgtcaacccattc
ctggctttttgcaaaggagatacagttcacttactcatgataaaaaaagagatgggtgcc
attcatgtcatcaaacagagacatattcatctcagctgtgacattatcagcttgaattgg
attaatgattctacactagtcctggtcgacagccatgagaagctactggttgtagaccat
cccagtcaggaaattttagaagttctggacctggagcaggtgcaattggtctacaacacc
cgccatttcaaatcactggccacaggcgggaatgtctcccaggctttggcttttgttgga
gaaaaagcatgctatcaatccatttcaaggtatggaggacatatcgtctgtttgggcacc
aagtcagctcattctgtgactctcagaacttggcgagagcgcattgacttgatgttgaag
caggaccattttgttgaagctctctccctggcttggtcattccatgagggaacagctaag
gctgtggttggtctttgtggtgagccgttgaaaagaaagggaattgttggtgacaagatg
gtagagatcctcttccagtttgctgatcatacttttaagatgtgcccagaacaagggaga
atccaagtgatggagcagcattttcacgatgtgattcctatcttgatagatttctgcctg
ctgctacaaaggcctgatctcctgtttgaccagctttatgctcagctcgcggagaatctg
gtggctaaaggtgttttcctggaattacttgagtcatatattgctactaaccatcttggt
cacctccccacaaccgtcttgaaggatctcttggctcattacaacagcaaaggcttgatg
gacaacctggagagatgtattgtccatctggatgtcacaagcctagatatacagcaggtg
gttcaagtctgttgggaaaaccaactatatgatgcaatgatctatgtttataacagcgga
atgaatgactacatcacgccaatggagaaacttttttctgtaattggtccaccacttcga
gaaggaaagagcttaacaactgaagaagtggtgatgggaaacaaacttttagtgtatatc
agttgttgtcttgctggaagggcctatccccttggaaacattcctgaggaccttgtcgtt
cagatcaagattcaggtgtttgagtacctgattctactccataatggggaatcctcatca
gatgcttatcctcttattcaaatactccttcactttgatacccgagaattcctaaatgtt
ctttcgatgacatttgaagacttgaatgacaaacaagccatagaataccagcagaggata
gtggacattttacttcaggtgatggtggacaacacagactttacaccatgccaagtgggt
ggccttttcacgtttttggctcggcagctgtccaaaccagacaacacactttttgtaaac
agaaaattatttgaccaggtcttggagttcctctgcagatctggtgatgcctctcgacat
actgaacgacagcaggttctgctgcaactgctccaagttgggggtgtggtgcagtttgat
gaagaaaagcttttgactttggcacaaagagccaagttctaccaaattttggaatttctt
tatgagaagaaacatatgtatgacaagaccatcgactgctacctaaaagaccctctgaga
aaggaggagatcttcagctatatccaccaactgatgtctgtggcaagccgcagttctgaa
gagaaacagggaatcaagaacaaaacactagagcacatacaggaactgatcatccttgat
caaaggaaatctgctgacctggttctgtgtcatcttattgaagaagtggatcaaattgtt
tgtaaacttcaggatggcgtcccgcttttacagtttttgagctcattcttggaaatatgg
gaacatcaatatccaggaatgatccttccaacggaacataagcttcaaaagcatctactg
gacttgttgtgccgttttgccccccaagagctcttgaatttccttcaaacatcagagcag
tatagattggaggatgccatgcaaatcactgaaaagtaccaccacagttacgctacaggt
tatctactcgagaagaagggagacttttatggagcatttacagttttgttggaggcagta
aaagccgagatttctcaactaactgcagacccaaccagtgcgcagagtgaagatgagaaa
gaaaatgagtcggctctattgagaagagtagaacattcactgaacaaccttgttgccttg
ggtcaccgcaatgctcagaaaatccaacagtcacaaatcaaggagctgtggatctcatta
ttggggacactgatgacaccccagaaacaagtcttaaaggacctgacagtgaacgttctc
aacagtatgagcaccttggtttcactgcctgctatcatccagcagatactgaagaacccc
atttatgagacaggaaaatttgcagagatccaagtccttattcttgggatgctcgacact
ttccgctatgaacagactttatttgaaacaactacaagtctactaaatcatgacctccac
tggtccctgtctcatttgcggactgctgtgagaagggggctccatccaaggcaagactct
tgcaacatttgcctacaacagtacaagaggtggcaggactcagctgagcagattgttcta
tttagctgtggccacctataccacgtccaatgcctgcagcagactgtggactgtgggttg
ccatgtacttcagagcagcagcagcagtggagttgctacaagtgttctaccactcacaga
gaaagaggtccgcagtacaccatgccaaagagtcactgcacatcccttgcacaggctcga
attttatccatgcattgtgatgaagctcgttggaagaaggaaggaagactggacattcaa
caagaacagtcctgggatcagctgcattgtttgtacaaaggaccatcgagattgtccatc
ctggcagagctctctcaccaccaccacaataagagaacagggattatttttcaaggtcat
ccagcacaagagggtttcagtcttaagctatctcctccacctgttttggaagaatag
DBGET
integrated database retrieval system
