Syngnathoides biaculeatus (alligator pipefish): 133510250
Help
Entry
133510250 CDS
T09681
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
133510250 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbia03400
]
133510250 (msh6)
DNA repair and recombination proteins [BR:
sbia03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
133510250 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
RhoGAP_pG1_pG2
Motif
Other DBs
NCBI-GeneID:
133510250
NCBI-ProteinID:
XP_061694040
LinkDB
All DBs
Position
12:complement(15488302..15496687)
Genome browser
AA seq
1377 aa
AA seq
DB search
MAKQSSLFNYFSKSPPPVPRLKPQAHPVEAALPSSVDKSNSSPKEEAKLPPSRATKVKPK
SVVKNPKGGFNKVVGDKASTAKLESSTCAFSAGSLVWTKLEGHPWWPCMVVPQPLTGQQM
RGRGRTQRVHVHFFDEPPTRGWVSTKYIRKYQGSDSSDAKSGGLFFSGKPQVSHAMELAD
KVLFDSPEKRLKMSLCTDPSDEEEEEEEMEQLDHSPVTDDEISGEDQEKNGELNSSEVSP
HPTRSKGNKAKRRRIVVASDSEGSDDEFKPEPAASSSEDDEEGVTVSGEDEEAESTQESE
AESPVKPVKRKRPTEKPAVAKRKIATTPSSASKRAPASIAVDTKSRLSVFSAADSFESQP
KGSATGGGSTIWDHEKLEWLQDHRRKDNQRRKVTDEGYDPTTLYVPEDFNNRNTPGMRQW
WHIKSRMFDTVIFYKVGKFYELYHMDAVIGVNELGLTFMKGTWAHSGFPEIGFGRFSDVL
VQKGYKVARVEQTETPEMMEARCKTLAKPTKFDRVVKREVCRIITRGTQTYSVLDGTPGE
SHSKFLLSLKEKPEDEGKGGCCRIYGVCFVDTSVGLFHVGQFPDDRHCSRLRTLIAHFPP
AEVLFERGNPSAETRKILKASLSAALQEGLNASTQFWDAQKTLKTLSVEDYFRDNAGKDQ
GIGSSFLPCILRKMTSECDLLGLTPKEGYELALSSLGGCIFYLKKCLVDQELLSMANFEE
YIPVDVEMKKSDIRKSFFAQTRQRMVLDGVTLANLEIFQNGSGGTEGTLLERLDTCSSPF
GKRLLKQWLCAPLCNPRSIRDRLDALEDLMAAQAQVSEVSDLLKKLPDLERLLSKIHSIG
TPLKGQDHPDSRAVLYEEVTYSKRKIADFLSAFEGFQTIQEIANVFAPVTANFQSKLLSQ
VMSFKSDNGGLFPDLSAELKRWETAFDHQKARTTGVITPKDGFDPEYDQALVGIKRCERK
LQDYLDREKKRIGCKNMAYWGTGRNRFQMEVPDSISQRNIPEEYEVKSTKKGWKRYVTNE
SEQLFCELQGFEEKRDAALRDCMRRLFYNFDKNYSNWKTAVECMAVLDVLLALLRYSQGG
DGPMTRPQVVLPGGDKEVAPFLELTGSRHPCVTKTFFGDDFIPNDIYIGCLRGSEEDDVQ
NSHASCVLVTGPNMGGKSTLMRQCGLVIVLAQLGCFVPAESLRFTPVDRVFTRLGASDRI
MAGESTFFVELSETACILHHATKHSLVLLDELGRGTATYDGTAIACAVVKELAEKICCRT
LFSTHYHSLVEDFANNPAVRLGHMACMVENECEDPSQETITFLYKFISGACPKSYGFNAA
RLASLPEKVIQSGHRKAREFEKTTVSLRLFKKLWQFSEDTTQDKSHFAAIVQMIHRM
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagttcacttttcaattacttctccaagtctccaccaccggttcccagg
ctaaagcctcaagctcacccggtcgaggccgccttgccgtcctccgtcgacaagtccaac
tcgtcacccaaagaagaagctaaactacccccgagcagagccaccaaagtcaaaccaaaa
agtgtcgtgaagaatccaaaaggaggattcaacaaagtggtcggcgacaaggcatcaaca
gccaaacttgagagctccacatgtgcattcagtgcaggttctcttgtgtggacaaagctg
gaggggcacccgtggtggccatgcatggtggtacctcaacctctaactggacagcagatg
cgaggccgtggtcggacccagcgtgtgcatgttcatttttttgatgaaccgcccacgcgg
ggatgggtcagcaccaagtacatcagaaagtaccaaggttcagacagcagtgatgctaaa
agtggaggattgtttttcagtgggaagcctcaagtcagccatgcaatggagcttgcagac
aaagtattgtttgatagcccagaaaaacgattaaagatgtctctttgcacagatccatca
gatgaggaagaggaggaagaagaaatggagcagcttgatcactctccagtgactgatgat
gagatcagtggtgaggatcaagagaaaaatggggagttaaactcatctgaagtcagccca
catccaacccgatccaagggaaataaagccaagcgccgccgcatagtcgtggcctcggat
agcgagggatccgatgatgaattcaaaccagagccagctgcaagcagcagtgaggacgat
gaagaaggagtcacagtgagcggtgaggatgaagaagcagagagcacacaagagtctgaa
gcagaaagcccagttaagcctgtaaagcgtaaacgtcccacggagaagcctgcagttgca
aagcgaaagatagccactaccccttccagtgcatcaaaacgtgctccagcatccatagct
gttgacacaaagtctcgtttatctgtcttctcggccgctgacagctttgaaagccaaccc
aaagggtcagccacaggtggaggatccactatttgggaccacgagaagctggagtggttg
caggatcataggaggaaagacaatcaaaggcggaaagtgactgatgagggatatgatccg
acaaccctgtatgtgccagaagacttcaacaacagaaacactcctggtatgcgtcagtgg
tggcatatcaaatctaggatgttcgacaccgttatcttctacaaagttggaaagttctat
gaactttatcacatggatgccgtgatcggagtgaatgagcttggacttacttttatgaaa
gggacctgggcccattctggctttccagagattggttttggacgcttctcggatgtacta
gtccagaagggctacaaagtggcacgtgtggagcagactgaaaccccagaaatgatggaa
gcccgatgtaagactctggccaagcccaccaagtttgaccgtgttgtgaaaagagaggtg
tgcagaatcattacgcgaggcacccaaacctacagcgtcttggacggtactcctggtgag
agtcacagcaagtttctgttaagtttgaaggagaaacccgaagatgaaggaaagggtggg
tgttgccgcatctatggagtctgctttgtagacacctctgtgggcctcttccatgttggt
cagtttccagacgaccggcattgttcacgtctccgcaccctgatcgcacattttccgcct
gccgaagtactttttgaaagggggaacccatctgctgaaacacgtaaaatactaaaggct
tctctctctgcagcgctacaggagggactgaatgcaagcactcagttttgggatgctcag
aagactctgaaaaccctttcagtggaagactactttagagataacgcaggcaaggaccaa
gggatagggagtagtttcctaccttgtattctccgaaaaatgacctctgagtgtgatttg
cttggtcttactcccaaggagggctatgaactggcactctcatcattgggtggatgtatc
ttctacttgaagaagtgtcttgtggatcaggagctactctctatggccaacttcgaagaa
tacatccctgtcgatgtggaaatgaagaaatccgacatacgaaaaagtttctttgctcag
acacgccaacgcatggtgttggatggagtgactctggcaaaccttgaaatatttcagaat
ggctctggcggtacagagggaactctgctcgagcgcctagacacttgctccagccccttt
ggaaagcggctactcaagcagtggctttgtgctcctctctgcaacccaagatccatcagg
gacaggctggatgcactggaagacctgatggctgctcaagcacaagtgtctgaagtttca
gacctgctaaagaagcttcccgatttagagcgcctcctgagtaaaattcatagcatcggc
acaccactgaagggtcaagaccacccagacagcagggcggttctgtatgaggaggtcacc
tacagtaagagaaaaatagccgactttctttcagcatttgaaggtttccaaacgatccag
gagattgccaatgtctttgcaccagtcacggctaactttcaatccaaattactcagtcaa
gtgatgagttttaagagtgacaacggtggtctctttcctgacctgtctgctgaactcaag
cgctgggagacggcctttgaccaccaaaaagctcgtaccaccggtgtcattaccccgaag
gatggctttgatccagaatatgaccaggctcttgtaggcatcaagagatgcgagcgaaag
ctacaggattatcttgaccgagagaaaaagagaataggctgtaagaacatggcgtactgg
ggaacggggcgaaatcgctttcagatggaggtccccgacagcatctctcagaggaatatt
ccagaggagtatgaggtgaagtcaacaaaaaaaggttggaagcgttatgtgacaaatgag
tctgagcagctgttctgcgagttacaaggatttgaggagaagagagacgctgctctgaga
gactgcatgaggaggctcttctacaactttgacaaaaactacagcaactggaagacagcg
gtggagtgcatggctgtgcttgacgttctattggccttattacgatacagccaaggggga
gatggtccaatgaccaggccacaggtggttctcccgggtggcgataaggaggtagcaccc
ttcctcgagctcactggttctcgtcacccctgtgttaccaagacattctttggcgacgac
ttcattcccaatgacatctacattggctgcctccgtggcagcgaggaagatgacgtccaa
aacagtcatgcctcctgcgtcctcgtcactgggcctaatatgggtggaaagtctactctc
atgagacagtgcggccttgtgattgtgctcgctcagttgggttgcttcgttcctgccgag
agtctgcgcttcacgccagtcgatcgagtcttcactcgactgggagcttccgatcgtatc
atggctggagagagtaccttctttgttgagttgagtgaaactgcgtgtattctgcaccat
gccaccaaacactctcttgtgcttctggatgaattaggaaggggcacggccacatatgat
ggcacggccatcgcctgcgctgttgtgaaggagcttgctgaaaagatctgctgtcgcact
ctcttctcaacacactaccactccctggtggaggacttcgccaacaatcctgcggtgcgc
ctcggccacatggcatgcatggtggaaaatgaatgtgaggatccaagccaagaaaccatc
accttcctgtacaagttcatctccggggcgtgtcccaagagctatggcttcaatgcggct
cgacttgccagcctaccagaaaaggtcatccagtcaggacacagaaaggccagagagttc
gagaagaccaccgtcagccttagactcttcaagaagctttggcagttttcagaagacacc
acacaggacaagtcccattttgctgcaattgttcagatgatccatagaatgtaa
DBGET
integrated database retrieval system
