Syngnathoides biaculeatus (alligator pipefish): 133510267
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Entry
133510267 CDS
T09681
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sbia00536
]
133510267 (col13a1)
Glycosaminoglycan binding proteins [BR:
sbia00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133510267 (col13a1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Chromo
Pox_A_type_inc
Motif
Other DBs
NCBI-GeneID:
133510267
NCBI-ProteinID:
XP_061694074
LinkDB
All DBs
Position
12:27101182..27294896
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AA seq
664 aa
AA seq
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MEIEQKWTEARKMSQKLQKNPSKKLMWDNWRDFSSVTLCIALGLLSVGVVFVRMTALQSR
IVSLEQQHLSPWMMSLEQLEPVILDRLDQILEKKLAAQLPKMREVREAPSSCLCPPGPPV
SRQDTLCDPCGGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKHGQNGAKGDMGQ
RGLKGLPGEPGPKGEKGVCGDYTHRSLFVQDLPLKTLGALRSRQPLMLKQGDPGAQGPPG
PPGPPGLPGSPGQNGANGSPGKPGEPGKPGKDPRLLPGLKGEQGLPGQKGDRGDVGPKGP
DGLKGEKGEAITSTFGIKGEPGSPGVPGLMGTKGEKGDQGKQGEAGPEGPAGPRGPPGPT
GEPGKAELHNNENDIRNIHLMGPPGLPGPPGPPGFTGAKGEVGLPGPPGLDGEKGMKGEP
AAGGRSELLYGPPGPPGPSGPVGPAGLQGPSGPKGEPGLGLRGEKGAIGQKGDKGDRGHL
GLPGAHGLDGRPGPVGLIGPAGIPGPAGPKGERGESGDGGLPGPIGPQGIPMGQVALKTK
KVEESSSNTFLEHPTGEEDIWKQVDEGAPYVPRQQTSPESHVVAGSSAQVPPAPCMVDGG
LVYTVRRLLSSRRRRRGVQYLVDWEGYGPEERSWIPSRFVVDRSLIRDFHAAHPDAPGPS
RAGR
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggagatagagcagaaatggacagaggctagaaaaatgagccaaaagctacagaagaac
ccttctaaaaagctgatgtgggacaactggagagatttttcttctgttacactttgcatt
gcattaggtctgctaagtgttggagtagtttttgtacgaatgacagccttgcagtcaagg
atagtaagtcttgagcagcaacacttatctccctggatgatgtccctggagcagttggaa
cccgttattttggacagactggaccaaatactggagaagaagcttgcagcgcaattacca
aagatgcgagaagtgagggaggcaccttccagctgcttgtgtccaccaggacctccagta
agtagacaagacaccttgtgtgatccatgtgggggagcaccaggagaaccaggtctgtct
atcattggaccaagaggacctccgggtcaacctgggacaagaggatttccaggctttcca
ggtccaattgggctggatggcaagcatggacagaatggggccaagggagacatgggtcag
cgtggccttaaaggacttcctggagaacctggacctaaaggagagaagggtgtttgtggc
gactacacacatcggagcctatttgtgcaggatcttcccctgaaaaccttgggtgccttg
cgctccaggcaaccactgatgttaaagcagggtgacccaggagcgcagggccccccagga
ccaccagggccacctggtcttcctgggagcccaggtcagaacggagccaatggctcaccg
ggaaagccaggggaaccaggaaaacctggaaaagacccaagactcttaccaggactgaag
ggcgaacaaggtttaccaggacagaagggtgatcgaggggatgttggtccaaagggtcct
gacggcctaaagggagaaaagggagaggctattacttcaacatttggaattaaaggagaa
cccggttcaccaggagtgccaggcctaatgggaactaagggtgaaaagggtgatcaagga
aagcagggagaagcaggccctgaaggcccagctggaccaagaggcccgccaggaccaact
ggggaaccaggaaaggctgaacttcataacaatgaaaatgatattcgcaacatacatctt
atgggcccccctggattacctggacctccagggcctccgggattcactggggcaaaaggg
gaagttggcctcccaggtcccccggggcttgatggagagaagggcatgaaaggtgagcct
gcagcaggaggaaggtcagagctgctctatggtcctccaggtcccccaggaccatcagga
ccagttggcccagcaggattgcaagggccttctgggccaaagggagagccagggctcggc
ctcaggggagaaaagggagcaataggtcagaagggtgacaagggagacagaggtcatctt
ggactgcctggggctcatgggttagacggcagacctggtccagtgggtctgataggacca
gcagggataccaggaccagcaggaccaaagggagagagaggtgagagtggagacggagga
ctaccaggaccaattggcccgcaaggcattcctatgggacaggtggcattaaagacaaag
aaagttgaggaatcctcatcaaacacctttttagaacatcccacaggtgaagaggatatt
tggaagcaggtcgatgagggtgcaccctacgttccacgtcagcagacttcgcccgaatcg
cacgtcgtcgctggctcctccgctcaagtcccccccgccccctgcatggtcgacggtggg
ttggtgtacaccgtgcgccggttgctgtcttcccgccgcagaaggaggggggtccagtac
ctggtggactgggagggatatggcccggaggagcgctcatggatcccctcccgcttcgtc
gtggaccgctccctcatcagggactttcacgcggctcaccctgatgcgcctgggccgtcc
agagccggccgttga
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