KEGG   Syngnathoides biaculeatus (alligator pipefish): 133510381
Entry
133510381         CDS       T09681                                 
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
sbia  Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04115  p53 signaling pathway
sbia04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:sbia00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    133510381 (cop1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    133510381 (cop1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sbia04121]
    133510381 (cop1)
Enzymes [BR:sbia01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     133510381 (cop1)
Ubiquitin system [BR:sbia04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    133510381 (cop1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     133510381 (cop1)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd WDR55 WD40_Gbeta Beta-prop_EIPR1 Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd zf-C3HC4_2 EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_C Beta-prop_WDR19_1st zf-C3HC4 Beta-prop_CAF1B_HIR1 Beta-prop_NOL10_N WD40_MABP1-WDR62_2nd zf-RING_2 Beta-prop_EML Beta-prop_DCAF4 zf-RING_UBOX DSE1_N ASA1 Beta-prop_WDR90_POC16_2nd zf-C3HC4_4 Beta-prop_Aladin zf-C3HC4_3 zf-RING_5 RING_XB3-XBAT31 WD40_like WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_DCAF12 PAC11 Beta-prop_WDR41 Beta-prop_NUP159_NUP214 zf-rbx1 WDR90_beta-prop_4th zf-RING_10 RING_ZNF598 UvrD-helicase RING-HC_RBR_RNF216 Sina_RING zf_C2H2_10 zf-C2H2_AcuF
Other DBs
NCBI-GeneID: 133510381
NCBI-ProteinID: XP_061694195
LinkDB
Position
13:23955871..24033331
AA seq 715 aa
MMSNKRSPQFAGSASSVPSTSSSTSSTSGTGGSAINPSGGTNGVTSNGNNSVNVVPSRTL
TTAGDSGLSVPTLVAVSSSRGGFASLSRPSASSGSRKRSLQQAPLYNGLLNSYEDKSNDF
VCPICFEMIEEAHMTKCGHSFCFKCIRQSLEDSNRCPKCNYIVDNVDQLYPNFLVNELIL
KQKQRSEEKRHKLDHPNGSRWHVLQDVLSPDQENLDLANVNLMLELLVQKKKQLEAESQA
AQRQILMEFLNEARRNKREQLEQLQKELNFLEEDIKRVEEMSGIYSPMEAECTVPNVEAH
SPSPSCSSIIEPANYNQPPEFGGTGQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNKM
SRISEEGRNLNQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYF
AIAGVTKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVI
LWDGFTGHRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKA
NVCCVKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSA
STDSQLKLWNVNKPHCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLL
TFKFDTVKSVLDKDKKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq 2148 nt   +upstreamnt  +downstreamnt
atgatgtcaaacaagcgatccccgcaatttgctggcagtgcaagttctgtgcccagcaca
agtagcagtactagtagcaccagtggtacaggaggctcagcgatcaaccccagtggtgga
accaacggcgtcacaagcaatgggaacaattctgttaatgtagttccctcccggacactg
acaacggcaggtgacagcggcttgtcggttccaactttggtcgccgtgtcgtcgtcccga
ggtggtttcgcctctctgagtagaccgtccgcatcctccggcagcaggaagagatccctc
caacaagcacctctttacaatggcctgttgaactcgtatgaagataaaagcaacgatttt
gtctgcccaatttgcttcgaaatgatagaagaggcacacatgaccaagtgtgggcacagt
ttttgcttcaaatgcatccgccagagtctggaggatagcaacaggtgtcccaagtgcaac
tacattgttgataatgtggatcaactttacccaaacttccttgtaaatgaactcatcctt
aaacagaagcaaagatcggaggagaagagacacaaattagatcatcctaatggatccaga
tggcatgttttacaagatgtgttaagtcctgaccaagagaacttggacctggcaaatgta
aatctaatgttggagctactggttcagaagaagaagcagctggaggcggaatcccaagca
gctcaaagacaaatcctcatggagtttcttaatgaagcaaggagaaacaaaagagagcaa
ctggagcaattacaaaaggagcttaacttccttgaagaggacattaagcgtgttgaggaa
atgagcggaatctattctccaatggaggcagagtgtacagttcccaatgttgaagcccac
tcgccatctcccagctgtagtagtataattgagccagcaaactataatcagccgccagaa
tttggtggaacaggccaggggaaaaggcagacctggtacaatagcacgttagcatcaagg
aggaaaagattgactgctcattttgaggatcttgagcagtgttacttctccaacaaaatg
tcacggatctcagaggaaggcaggaacctgaatcaactggatgactttatggagtgtctt
tccaaattcactcgctataattctgtccgacccctggcaactctctcctatgccagtgac
ctctataatggctccagtattgtctccagcattgagtttgaccgtgattgtgactacttt
gccatcgctggtgtgaccaagaagatcaaggtgtttgagtacggcactgtgatccaagat
gcagtggacattcactatcctgtcaatgaaatgacttgcaactctaaaatcagctgtatc
agctggagtagctatcacaagaacctcctggccagcagcgactatgagggtacagtcata
ttatgggatggatttaccggtcataggtccaaagtctaccaggagcatgagaaacggtgc
tggagtgttgactttaatctgatggacccaaagttgttagcatctggctctgatgacgcc
aaagtgaagttgtggtcaaccaatctggacaactctgtggccagcattgaagctaaggct
aatgtctgctgtgttaagttcagcccaacttctcggtatcatctcgcctttggctgtgcg
gatcactgtgtccattactatgacctccgcaacactaagcagccaatcatggtcttcaaa
ggccatcggaaagctgtttcttatgctaagtttgttaatggagaggagatcgtttctgcg
tcgacagacagtcagctgaagctgtggaatgtcaacaaacctcattgcctgcgctccttc
aagggtcacatcaatgagaagaactttgttggcctggcctctaatggagactatattgcc
tgtggcagtgagaacaattccttgtatctgtactacaaaggactttccaagacactttta
accttcaagtttgacacagtaaagagtgtgcttgataaagataagaaagaagatgacacc
aatgagtttgtcagtgctgtctgttggagggctctgcctgacggagagtcaaatgtgttg
attgctgcgaacagtcaaggaacaattaaggtacttgagcttgtctga

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