Syngnathoides biaculeatus (alligator pipefish): 133510395
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Entry
133510395 CDS
T09681
Name
(RefSeq) collagen alpha-4(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04382
Cornified envelope formation
sbia04510
Focal adhesion
sbia04512
ECM-receptor interaction
sbia04518
Integrin signaling
sbia04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133510395
04518 Integrin signaling
133510395
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133510395
09142 Cell motility
04820 Cytoskeleton in muscle cells
133510395
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
133510395
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sbia04147
]
133510395
00536 Glycosaminoglycan binding proteins [BR:
sbia00536
]
133510395
Exosome [BR:
sbia04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
133510395
Glycosaminoglycan binding proteins [BR:
sbia00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133510395
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
133510395
NCBI-ProteinID:
XP_061694216
LinkDB
All DBs
Position
13:9575123..9601932
Genome browser
AA seq
1671 aa
AA seq
DB search
MRSSCAALTWWVLRWILLLLVTAKQLNAGNVEGPCAGRNCSVCQCFPAKGARGPPGKSGK
QGPHGPMGPVGLVGLAGEKGRWGEQGSPGPEGPKGARGNIGPPGFPGHEGSLGHPGAGGE
PGLPGVDGCEGARGQPGIPGIPGLDGLHGPPGFPGPKGLKGEPLYTDSLPGLPGDPGQPG
DHGRPGPVGEPGSKGYIGPPGPPGNQGSKGFKGDRGLPGDPGRPQPGTNGDDGEQGPPGP
QGPEENIEFPPEFLPPKGSKGDRGHPGPCGPKGKPGGRGDTFSQGMKGEEGILGFPGPRG
FPGSPGSSGPLGLEGLPGERGLPGLIGTIGPKGYRGDPGLPGPLQYLKGSTLRGEKGEKG
YRGDPGLPGDFGIMGTNGPPGPKGLPFPACLGVPGPSGPPGPKGFKGEPGRSNDLINLLP
GPKGRKGLRGIKGVTGLPGPSGCCDYVCEPGYPGGPGDRGPPGPLGNKGLKGYQGCEGEC
KCQFSQGPLGPPGHPGFPGAPGLPGTPGIDGDPGLNGEKGPTGPHGAKGYVGLKGVKGQK
GDDFISTIQGPKGNRGDDGHPGSSGQLGKPGLDGPPGLTGDPGPPGTSYIGRPGPKGDPG
TVGPKGFPGIPGLPGPGFQGPQGPAGPKGDQGYPGLPGILGRKGPPGDTKLCCHENVTGS
PGLKGEPGGPGIPGEPGRDGIPGALGLPGPKGMKGDDGGIGVIGPPGPQGLNGDQGDRGM
SGNSLDGSPGNPGLPGLPGRKGSPGDVLSALPGPPGQPGQPGYRGRKGIPGSPGTPGLPG
LQGQPGQPGCKGEQGFNGDHGAPGLPGLPCSLCEITGLPGPPGPPGNPGPSVPGIPGPRG
PRGDPGRPGHGHPGAPGLPGLPGIPGLAGPRGPSGSPGDPGNDGWPGQKGESGFPGRDGD
RGLPGPPGPPGPRGKQGERGLFGPPGATGEPGHPGIKGIRGPIGLPGESRLVTLTKGAQG
IDGTRGQPGLPGPIGAKGQSGGPGDPGAEGLPGSPGIKGDAGVPGRSGIPGDSGDPGLKG
FPGPRGYRGSDGDLGDPGSRGHPGIPGVPGFPGCKGDPGDSLGQTGRPGPKGIKGELGYS
EPIGDPGDPGNLGTSGYPGNPGWPGARGEPGRHGGPGFPGPIGLPGHPGVPGVQGDSGYA
GPLGPPGPTGPSGLPGPPGLPGLDGLQGPKGMKGATGVTSAGRPGPDGFPGVKGPGGLPG
PPGTSIPGQKGLMGPPGDSGPPGSQGEPGYPGRECDKPLAGCVGDPGSEGAPGPQGPPGL
PGEQGSVSFYKGDPGLNGLPGPPGRKGDKGYQGNQGVSSYPGIPGPKGERGPPGVRGVHG
AKGPRGDPGPLGRKGVTGQPGVIGAKGSRGDSSCETPRRAPDGPAGPPGYPGPIGFPGAM
GPPGSDGPKGLKGPFGSRGLPGPPGPPGIDGSRGEQGDFGQPGFIGPQGSPGGRGDPGVP
GYTRSSSSGFLLVLHSQSVQVPSCPDGSSQLWVGYSLAYLEGQEKAHTQDLGQAGSCLPM
FSTMPFSYCNKAACHYSARNDKSYWLSTTAAIPMMPLSGHEIRSHISRCAVCETLSPAVA
FHSQDPSIPTCPPGWRSLWTGFSFLLQTGAGDEGGGQSLSSPGSCLKDFRTHPIIECQGA
RGACHYFANLYSFWLTTVRPIDQFVKPRPGTIKAAGEQRRKASQCQVCLRQ
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgagatcctcatgtgcagctttgacatggtgggtcctcaggtggatccttctccttctt
gtcactgcaaagcagcttaatgcaggaaatgtggaaggcccgtgtgcggggagaaactgt
tctgtgtgccaatgttttcctgccaaaggtgctcggggaccaccaggtaaatcaggcaag
caaggacctcatggcccaatgggaccagttggtctggtggggctagctggagagaaaggc
aggtggggagaacagggatcaccaggcccagaagggcccaaaggagcccggggcaacatt
ggaccaccagggtttcctggtcatgagggctcactgggtcaccctggagcgggtggtgag
cctggattgccaggggtcgacggctgtgagggggctcggggtcaacctggcatccctggt
attcctggtctggatggtctgcatggcccccctggatttcctggaccaaaagggcttaag
ggagaacccttgtatacggattcccttcctggactccctggggatcctggtcaacctgga
gatcatggtcgtcctggcccagtaggagaacctggatccaaaggctacattgggcctcca
ggtccacctggaaatcaaggctcgaaagggttcaaaggtgatcgaggactgccaggggac
cctggaagaccacagccaggcacaaatggagacgacggtgaacaaggtccacccggtcca
caaggaccagaagagaacattgagtttcccccagaattcctcccacccaaaggttccaag
ggagacaggggtcatccgggaccatgtggaccaaagggcaaaccaggtggaagaggagac
accttcagtcaaggaatgaaaggggaggaaggaattcttggttttcctggacctcggggt
tttcccgggtcacctggcagttcaggacctctaggacttgagggcttgccaggggagagg
gggcttccaggtctcattggaacaattggaccaaagggctaccgtggagatccaggactc
cctggtcccttgcagtatttgaaagggtctactctcagaggagaaaagggtgaaaagggc
tatcgtggagatcctggattaccgggtgactttggaataatgggtacgaatggacctcct
ggcccaaaaggactgccatttccagcttgtctgggtgtgcctggtcctagcggacctccg
ggtcccaaaggctttaagggagagccagggaggtccaacgacttaatcaacctgctccca
ggaccaaagggaagaaaaggactgcgtgggatcaaaggtgtcactggacttcctggtcca
tcaggatgctgtgactatgtatgtgagcctggttatccaggtggccctggtgatagagga
ccaccaggacctcttggaaacaaaggcttaaaaggatatcaaggttgtgaaggagaatgt
aaatgtcagttttcccaaggaccacttggtccccctggtcatcctggttttccaggagct
ccaggattgcccggaacaccagggattgatggagaccccggactgaatggagaaaagggt
cccacagggccacatggggctaaaggatatgtgggtttaaaaggagttaagggacaaaaa
ggggatgattttatttcaacaattcaaggtccaaagggaaaccgaggagacgatggacat
cctggttcctctggacaacttggtaaaccaggactagatggtcctcctgggctgacagga
gaccctggaccaccaggaacctcttatattggtagacctggtcccaaaggagacccaggt
acggttggtccaaaaggttttccaggaattccggggctcccaggtcctggtttccaaggt
ccccagggtccagcaggaccaaaaggagaccaagggtatccaggccttcctggaattctc
gggcgaaagggccccccaggtgacacaaaactctgttgtcatgagaatgtgaccggatca
ccgggtcttaagggagaacctggaggaccaggaattccaggtgaacctggaagggatggc
atcccaggagccctaggacttccaggacctaaaggcatgaaaggagatgatggtggaatt
ggagtaattggacctccaggaccacaaggtttaaatggagatcaaggtgaccgtggtatg
agtggcaatagccttgatggttctccaggcaatcctggactaccaggtctacctgggagg
aaaggttcccctggtgatgtgctcagtgctttaccaggtcctcctggtcaacctggccaa
cctggatatagggggagaaagggtattcctggtagtccaggaaccccagggcttccaggt
ttacaaggccaacctggacagccaggttgtaaaggagaacaaggatttaatggtgaccat
ggagctccaggacttccaggtctaccatgttcattatgcgagataacaggccttcctgga
cccccaggacctccaggaaaccctggaccgagtgtgccagggattcctggtccaaggggc
ccaaggggagatcctggacgtcctggtcacggccatccgggtgcaccgggtctccctggt
cttcctggtataccaggcctagcaggaccaagaggccctagtggatccccaggagatccc
gggaatgatggctggccaggacagaaaggtgagtctggctttcctggcagggatggagac
agaggcttaccagggcctcctggacctcctggacccagaggcaagcaaggagaaagaggc
ctttttggtccaccaggtgccacaggagaaccaggacatcccggtattaaaggaatacgt
ggccccataggattacctggagagtcaagacttgtgactttaacaaagggagcacaagga
attgatggcacaagaggacagccaggcctaccaggaccaataggtgcaaagggccaaagc
ggaggaccaggtgatccaggagcggagggcttacctggttcaccaggaattaaaggggat
gctggtgtaccaggccgatctgggatacctggagattctggggatcctggattgaaagga
tttcctggaccaaggggataccgtggaagtgatggagatcttggagatccaggatcaagg
gggcatccaggaattcctggggttccgggatttcccggttgcaaaggtgatccaggagac
tctttgggacaaactgggagaccaggaccgaaaggaattaaaggggaacttggatacagt
gaaccaattggggatccaggagatccaggcaatctgggtacaagtggatacccgggaaac
cctggatggcctggcgctcgtggtgaaccaggaaggcacggtggtccaggttttcctggg
cctattggcctaccgggtcatccaggtgttcccggtgttcaaggtgatagtgggtacgcg
gggccccttggtccaccgggccctactggaccttcaggactacctgggcctccgggtctt
cctggactggatggtcttcaaggaccaaaagggatgaaaggagctactggagtaacgagt
gcaggccgtccaggaccggatggctttcctggagtcaaaggtcccgggggactgccgggc
cctccaggaacctctattcccgggcagaaaggccttatgggaccaccaggtgactcaggt
cctcccggttctcaaggtgaacctggttaccctgggagagaatgtgacaaacctttggca
ggatgtgttggagatccaggatctgaaggggccccaggtccccaaggtcctcctggactg
ccaggtgaacaaggcagcgtttcattctacaaaggagatccggggctaaatggcctacct
gggcctccaggccgaaagggagataagggctatcaaggaaatcaaggagtttcatcatat
ccaggaataccaggacccaaaggtgagcgaggccctcctggcgtcagaggtgttcatgga
gctaaaggaccgagaggtgatcctggacccttggggaggaaaggagtaactggccaacct
ggagtcatcggggccaagggctcccgaggagattcttcatgtgaaaccccacgaagagct
ccagatggccctgcaggaccacctggttacccaggacccattgggttcccaggcgcaatg
ggtccgcctgggtctgatggacctaaaggactaaaaggtccatttggctctcgcggcctc
cctggacccccaggtccacctggtattgatggttcgagaggtgaacaaggagattttggt
cagccaggattcatagggcctcaaggcagcccaggcggacgcggtgacccaggcgtgcca
ggttatacgagatcatcaagctcagggttcctgttggttcttcacagccagtcagttcaa
gttccgagttgccctgatggcagcagtcagctttgggtgggctatagtctggcctacttg
gagggacaggagaaggctcacacacaagaccttggtcaagccggctcttgcttgcccatg
ttttccaccatgcccttctcctactgcaacaaagccgcctgccactactcggctcggaac
gacaaatcctactggctctccacaacggcagccatacccatgatgccgctctccggccac
gagatcagatcccacatcagccgctgcgcggtttgcgagacgctttcgcccgcggtggct
ttccacagtcaggatccatcgattcccacgtgcccgcctggctggaggagcctgtggacc
ggcttctccttcctccttcaaacaggggctggtgacgaggggggcggtcagtctctgtct
tcccccggtagttgccttaaggatttccgaactcaccccatcattgagtgccagggtgcg
cgaggggcttgtcactacttcgccaacctctacagcttctggctcaccactgtacgcccc
atagatcagtttgtcaagcccaggcccggaaccatcaaagctgctggggagcaacggcgc
aaggccagtcagtgccaagtctgcctcagacagtag
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integrated database retrieval system
