Syngnathoides biaculeatus (alligator pipefish): 133510396
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Entry
133510396 CDS
T09681
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04510
Focal adhesion
sbia04512
ECM-receptor interaction
sbia04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133510396
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133510396
09142 Cell motility
04820 Cytoskeleton in muscle cells
133510396
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sbia04147
]
133510396
00536 Glycosaminoglycan binding proteins [BR:
sbia00536
]
133510396
Exosome [BR:
sbia04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
133510396
Glycosaminoglycan binding proteins [BR:
sbia00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133510396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
133510396
NCBI-ProteinID:
XP_061694221
LinkDB
All DBs
Position
13:complement(9549679..9575061)
Genome browser
AA seq
1665 aa
AA seq
DB search
MSLLPLILLAALLMDASAKRCVCKGSSPCHCAGVKGARGDRGIPGGEGVPGPEGRKGIDG
HAGPPGPKGNTGPDGPVGPVGNPGREGKEGFAGSHGLPGIPGLQGPPGPPGAPGCNGTDG
EDGLPGIHGAPGLDGFPGPPGAAGPKGQSGVPVSAIPGPPGLPGRTGQPGDTGLTGITGP
PGDSGLRGPDGEIGPIGMPGSKGQGGIGIPGPAGPKGRQGPPGPPGSPGRVKEYFTESLV
VKGEKGDQGARGDKGCTGPAGDPGDGYSAKGAKGDKGQEGPEGKMGKDGELGQSGFMGRP
GPRGDPGFAGTTGPTGAKGDQGSPGLPGEIEIVAPVLLNGYTGDPGDLGQPGLPGRPGVV
GFPGPDGPPGDSSDLQGPQGPDGALGSKGNRGDPGDSYPGPSGPEGDPGDQGPPGDQGPP
GFPEDNDKKFAKGLPGMKGVRGIPGLVGYNGPPGMKGDKGEPCYNCTGKGVSGPPGPLGP
PGPQGIPGYNQGPGAKGDPGYPGSRGLPGSPGRIGITGVPGFPGQKGDSYSNIRLGVKGE
KGDTGYPGRPGVDGHPGSPGLQGRKGLQGPPGDLYSGEGDKGFPGPQGVWGRPGPQGYPG
AVGYGPIGLPGTKGNLGVPGFPGQPGIPGQKGEPGHILSNGFPGPPGFKGQPGLSGNQGV
PGVPGFIGRPGSPGQKGERGDGLYPGQPGLPGAKGEKGFPGIKGLPGIGLPGQPGQQGPP
GLQGMKGDGGYGLPGPKGQQGIPGSDGAQGPTGDPGIPGSPGSQGLPGNAGPRGEKGNKG
EIGPPGLPGTKDSCNSTLLGPSGLAGADGGPGLPGPDGLPGEKGKRGVPGFGQPGPAGEP
GHPGPTIPGPQGVSGPKGSRGQNGRPGQPGMRGDPGPDGLPGFGLQGLPGIIGPPGEIGN
PGFEGNKGLLGPPGLTGDPGPRGPPGSPSPIPTELIGWQGVAGSPGYPGPVGPWGDSGST
GAKGPRGNTGRPGRPGQTGPPGDHGIPGFLKGRRGPAGIQGDSGNQGNPGSKGLKGDHGI
PGGPGADGAPGPRGRKGEKGEPNYHGHGPPGPIGQKGEPGLSITHTMKGEKGQPGIVGAP
GLPGFHGLKGEPGPVGENGSPGYQGPRGIDGPQGIKGHRGPNGPPGPHGPPGSFGPQGPK
GSQGQDGIPGPSGQKGDNLAIEGAPGPRGLPGQLGPPGNPGSPGSATSGNPGLRGDRGPP
GPHGNSGPRGQPGRDGACFPGTKGDRGLDGGLGRPGYRGPPGPPGPPGPGLKGGRGDPGP
TGSPGYAGPPGDRGIPGQPGPKGQPGNSGPRGDSGPLGNNGYPGDKGDPGYIPGPPGPPG
TNGFPGRPGVKGEPGYGKVVYEPGPPGLPGSAGNVGQPGKAGPAGPVGRSGPPGPKGVPG
SSPVGQPGFTGLKGDKGVSGLPGLPGRPGDPGNKGQKGLPGQSGYGYVTSFLIARHSQSV
TVPDCPEGTTHIYSGYSFLFINGNERAHGQDLGTSGSCLPRFSPMPFLFCDTESNCRYAS
RNDYSYWLSTDAPMLPSMVALTGERLSSHISRCSVCETTSNVIAVHSQTTQIPECPVGWQ
SLWTGYSFVMQTGAGADGSSQPLVSPGSCLEHFRQVPFIECHGRGTCNYYPDSYSYWVAT
LKPDMFSKPVPQTVKGPSQQSIISRCRVCRKQQQAQKCDRCTKIL
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgcttcctcttatcctgcttgctgccttgctgatggacgccagtgccaaaagg
tgtgtgtgcaaaggaagttcaccgtgtcactgtgcaggagtcaaaggcgcccggggagac
aggggcattccaggaggtgaaggagttccaggaccagaaggccgcaaaggaattgatggt
cacgccggcccaccaggaccaaagggcaacactgggccggatggacctgtaggccctgtg
ggaaatccgggtcgcgaaggcaaagagggatttgcgggctctcacggtttaccgggcatc
ccgggtctgcagggcccacctgggccaccgggggctccaggctgcaacggaacagatgga
gaagatggacttcctggtattcatggagccccaggacttgatggatttcctggtccaccg
ggcgctgctggaccaaagggtcagtctggagtaccagtgagtgcaattccggggccaccg
ggacttcctggacgaacaggccagccgggagatacaggtttgacgggaattactgggccg
ccaggagactctggactacgtggacctgatggggaaataggccctatagggatgccagga
tcaaagggtcaaggaggcatcggtattccaggaccagctggaccaaagggtcgacaaggc
cctccaggcccacctggatcaccaggtcgggttaaggagtatttcactgagagccttgtg
gtaaagggtgaaaaaggagaccaaggagctagaggagataaaggctgcacaggtcctgca
ggagaccctggcgacggctattccgcaaaaggagcaaagggagacaaaggccaagagggt
ccagaaggcaagatggggaaggatggcgaacttggacaatctggatttatgggaaggccc
ggtcctagaggtgatcctggatttgcaggaacaacaggacccacgggtgcaaaaggggat
caaggttctcctggtctacctggggaaatagaaatagtggcacctgtgctgctaaatgga
tacactggagatccaggagatcttggccaacctggacttcctgggcgcccaggtgttgtg
ggatttcctggacctgatggaccaccaggagattcatcagatctacaaggaccacaaggt
ccagatggtgctctgggttctaaaggaaatcgcggcgacccgggcgatagttatccaggc
ccttctggtccagaaggggatcctggtgatcagggaccacccggagatcaaggtccacct
gggttccccgaagacaatgataagaaattcgccaaaggtcttccaggaatgaagggtgtc
agaggtatccctgggcttgtaggatataacgggccgcctggaatgaaaggggacaaggga
gaaccctgctataactgtacgggaaaaggagtatcaggtccaccgggtccactgggtcct
ccaggtccgcaaggaataccaggatataatcaaggcccaggagctaaaggagacccaggt
tatccaggaagtaggggcttgcctggaagtccgggtcgtattggcataacaggtgtccca
ggcttccctggacaaaaaggagactcatattctaatatcagattaggagtaaagggggag
aaaggagacacaggataccctggaaggccgggagtagatggccaccctggctctccagga
ctgcaaggtcgtaaaggtcttcaaggccctccgggggatctgtatagtggagagggagac
aaaggctttccaggtccacagggggtttggggcagaccaggaccacaaggctaccctggg
gcagtgggatatgggcctattggacttccaggaactaagggaaatttaggagttcctggc
ttccctgggcagcctggaattccaggccaaaaaggagaaccaggccacatcctctcaaat
ggttttcctggaccacctgggtttaaaggccaacctggattatcaggaaatcaaggtgtt
ccaggtgttccaggtttcataggcagaccgggttcaccaggacagaaaggggaaagaggt
gacggattatatcccggacaaccagggttaccaggagcgaaaggtgaaaagggttttcca
ggtatcaaaggcctcccaggtatcggtcttcctggtcaaccgggccaacaaggacctcct
ggtcttcaaggaatgaagggtgatggcggttatggacttccaggacctaaaggccaacaa
ggcattcctggaagtgatggtgctcaaggacctacaggagatcctggaatccctggctca
cctgggagccaaggattaccaggaaatgctgggccccggggagaaaaaggaaataaaggg
gaaattggcccaccaggacttccaggtactaaagactcgtgtaatagtactcttcttgga
ccatcgggactagcaggggcagacggtggtcctggactgcctggacctgacgggctgcca
ggtgaaaagggaaagagaggagtccctggatttggtcagcctggccctgcaggtgagcct
ggtcatcctgggccaacaataccaggtccccaaggtgtgagtgggccaaaaggaagtagg
ggacaaaatggacgaccaggccaaccaggaatgagaggagaccctggaccagatgggtta
ccaggatttggacttcaaggattacctggaattattggacccccaggcgaaattggtaac
cctggttttgagggaaacaaaggtttgttgggtccaccaggattgactggagatccggga
cctaggggtcccccaggatctccatccccaatacctacagagcttattggttggcaggga
gtggctgggtcgccgggttatcctggaccagttggtccttggggtgatagtggaagtact
ggagcaaaagggccaaggggtaatactggacgaccagggaggcctgggcaaacaggtccc
ccaggtgaccatggtattcctggattcttgaagggacgccggggacctgctgggatacaa
ggagattccggaaaccaaggcaatcctgggtcaaaaggactaaagggagaccatggaatc
cctggagggcctggcgcagatggtgcaccaggtccaaggggtcgcaaaggagaaaaggga
gagccaaactatcatggacatggcccacctggaccgattggacaaaagggggaaccagga
ttaagcatcacacacacaatgaagggtgaaaaaggacagcctggtattgttggagctcca
ggtttaccaggatttcacggactcaaaggagaaccaggacccgttggagaaaatggttca
cctggatatcaaggaccgagaggtatagatggacctcagggaatcaaaggacatagagga
ccaaatggaccaccaggtccccatggcccaccaggtagttttggtcctcaaggacccaaa
ggcagccagggacaggatggaatccctggaccatcgggacagaaaggagataaccttgcg
atagaaggagcacctggtccccgcggtctaccaggtcagctaggtcctccagggaatcca
ggttctcctggctctgctacttcaggaaatcctggattaagaggagacagaggacctcca
ggaccacacgggaactcaggtcccagaggacagccgggaagagacggtgcctgttttcct
gggacaaaaggagaccgtggacttgatggtggtttgggaaggccaggttatcgtggtcca
cctggacctccaggcccaccaggtcctggactgaaaggtggcagaggtgacccgggccca
acagggagcccaggttacgctggacctccaggagatcggggcattcctggtcaacctggt
ccaaaaggccaacctggaaattcaggaccaagaggcgattctggtcctcttgggaacaat
gggtaccctggtgacaagggagatcctggctatataccaggcccgcctggtccacctggg
acaaatggttttccggggcgacctggcgtgaaaggtgaaccagggtatgggaaggtggta
tatgaaccaggacccccaggcttacctggttccgctggcaatgttggacagcctgggaaa
gccggaccagcaggaccagtgggccgatcaggtcccccgggtcccaaaggagtcccaggt
tcaagcccagtgggacaacctggatttactggtctgaagggagacaaaggagtgtcaggg
ttgccaggcctaccaggcagacctggagacccaggcaacaagggccaaaagggattacca
ggacaaagtggttatggctatgtgacgagcttcctaatagcacgacatagtcagagtgtg
actgtacctgattgccccgaaggcaccacccatatttactctggctactctttcctcttc
attaacggaaatgagcgagctcacggccaggacctcggcacctcaggaagctgtctacct
cgattctcccccatgcccttcctcttctgtgacacggagtcaaactgccggtatgcctct
cgtaacgactactcctactggttgtccaccgacgcgcccatgcttccctccatggttgcc
ctcacaggggaaaggctttcttcccacatcagcaggtgctcggtgtgcgaaactacctct
aatgtcatcgcagttcatagccagacaactcaaataccagaatgtcctgtaggctggcag
tccctgtggactggatattcctttgtcatgcaaacaggggctggcgcagatggctcttcc
cagccgcttgtgtctcccggctcatgccttgaacatttccgccaagtgccgttcatagag
tgtcatggcagggggacgtgcaactactaccctgattcgtacagttactgggtggcgacc
ctgaaacctgacatgttcagtaaacccgttcctcagacagtgaaggggccttcgcaacaa
agcatcatcagtcgttgtcgagtttgccgcaaacaacagcaagctcagaaatgtgacaga
tgtacaaagatactttga
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