Syngnathoides biaculeatus (alligator pipefish): 133510402
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Entry
133510402 CDS
T09681
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1
KO
K14315
nucleoporin NDC1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133510402 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133510402 (ndc1)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
133510402 (ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
133510402
NCBI-ProteinID:
XP_061694245
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All DBs
Position
13:6973575..6984375
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AA seq
668 aa
AA seq
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MFSADQSCWFVRKVICWRAAASIAWAVLLLLLTTAVFVILSRFSPLHPIQTLSECLSFMG
SASGIFSLILLCAVTTIVGLLIFEYYTVVPSVACSKIALLGKLLHPRHVANSLVHCVMGV
LVAWCAAVTIGGRYEMLGDPCGLSDSPPQVCLNEYHLILLLAGAFVGFSHTLFGVVHNMN
YVSFHTVQQYKYLRFKGSLPLVVKCSATQALYSIRNYIVIYFFLGYIPREWICKMFNLNM
NSSSHRLDTISGLLDLSLLYHLWISATFLLFTWYIALLLFRIFITEGYSFPMQSSFTEDV
HQCLPRVLSDPQPAILKFLALQDLALLSQHSPLRRSEVFSLSQPGGHPHNWNAISRECQS
LLSDLTQRLVAYHDSMATNGRAKSLSSGSELKTLSGSSSVSSGVEDLMSPRVTSVPVKTP
GSVFARTAPSPLTAPFTPPYLDSPFGSPGLRRLTAPVDQGSPWHGAVQSPHVMRRAPRLW
SASTDSQSNGSPQLSAAPMPSPKQVISQPSLLAQFLHNRKEQVKNFLFKRVLIAYLFNKL
PEASSEALFADSQAHIWALEGLSYLVQASFSEDHFGVVQTTLPSILSCMLSLQEAVDRHF
KLPHASTKPVRMGGGMGELAYKTLRFALRAALKTAIYRITTTFGDHLNAVDMSAEHRKKL
QHFLHYKE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgttttctgcggatcaaagttgttggtttgtccgcaaggtgatttgttggagagctgca
gccagcatagcctgggccgtattgctgttgctgctcaccacagcagtttttgtcatcctc
agcagattcagtcctctccaccccatccagacactatcagaatgtttgtccttcatggga
agcgccagcggaattttctccctcatcctactttgcgccgtcaccaccatcgtgggctta
ttgatctttgagtattatacagttgtccccagcgttgcctgctccaaaatcgccttgttg
ggtaaactgctgcacccgcgtcatgtggcaaactccctcgtccactgcgtcatgggcgtc
ctggtagcatggtgtgcggccgtcaccatcggggggcgctacgagatgcttggggacccg
tgcggcctcagcgatagtccgcctcaggtgtgtctgaacgagtaccacctgatcctcctg
ctggcgggggcttttgtgggcttttcccacactctgtttggcgtcgtccacaacatgaac
tacgtgtcgttccacacggttcagcaatacaagtaccttcgctttaaggggtctttgccg
ctggtagtgaagtgcagcgccacccaagcgctttactccatcaggaactacattgtcatc
tatttcttcttgggatacatcccgagagagtggatctgtaaaatgtttaaccttaacatg
aacagttcttcccaccgtttggacaccatcagcggactcctggacctgtccctgctctac
cacctgtggatcagcgccaccttcctcctcttcacctggtacatcgccctgctcctcttc
aggatttttatcactgagggctacagtttcccaatgcagtcatctttcacagaggacgtg
caccagtgtcttcccagagttctgtctgacccacagccggccatattaaaattcctcgcc
ctacaggacttggcactgctctctcaacactcaccattacgacgcagcgaggtgttcagt
ctgagtcagccaggtggacatcctcacaactggaacgccatcagcagagagtgtcagtcg
cttctgagcgatctgacccagcgactagtggcgtaccacgacagcatggccaccaacggc
agggccaagtcgctttcatcgggaagcgaattgaagaccttgtccggctcgtcgtctgtt
tcttctggtgtggaggatctgatgagtccaagggtcaccagtgtcccggtcaagacgccg
gggtcggtctttgcccggactgcgccgagccccctgaccgctcctttcaccccgccctac
ctggacagccccttcgggtcgcccggtctgcggcgtctcactgcgcctgtggaccagggc
tcgccgtggcacggcgctgtgcagagtccccacgttatgaggagggcccccaggctgtgg
tccgcttccacagattcccagtccaacggcagcccgcagctctctgccgccccgatgccc
tctcccaagcaggttatctcccagcccagtcttttggcccagttcctccataacaggaaa
gaacaggttaagaacttcctgttcaagcgtgtgctgatagcatatttgttcaacaagctc
ccagaagcatccagtgaagcgctctttgcagacagccaggctcacatttgggccttggaa
ggactgtcctacctggttcaagcctccttctcagaggaccactttggcgtggtgcagacg
acgttacccagcatccttagctgcatgctgtccctgcaagaggcagtggaccgacacttc
aagctgcctcacgcctccactaagcccgtgaggatgggcggcggcatgggcgagctggcc
tacaagacgctgcgcttcgctctcagggctgcgctcaagacagccatataccgaatcacc
accacctttggagatcatctgaatgccgttgacatgtccgcagagcaccgcaagaagctg
cagcacttcctgcactacaaggagtaa
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