KEGG   Syngnathoides biaculeatus (alligator pipefish): 133510797
Entry
133510797         CDS       T09681                                 
Name
(RefSeq) RNA-binding protein MEX3B-like
  KO
K15686  RNA-binding protein MEX3 [EC:2.3.2.27]
Organism
sbia  Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:sbia00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbia03019]
    133510797
   04121 Ubiquitin system [BR:sbia04121]
    133510797
Enzymes [BR:sbia01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     133510797
Messenger RNA biogenesis [BR:sbia03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     133510797
Ubiquitin system [BR:sbia04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    133510797
SSDB
Motif
Pfam: KH_1 KH_Vigilin zf-C3HC4_3 KH-I_KHDC4-BBP zf-RING_2 KH_BICC1_1st zf-C3HC4 KH_2 RING_XB3-XBAT31 KH_DEAH11_2nd Prok-RING_4 zf-RING_5
Other DBs
NCBI-GeneID: 133510797
NCBI-ProteinID: XP_061695131
LinkDB
Position
13:11543734..11557679
AA seq 644 aa
MPSPLFHPDIMDHDVVISSQHNGVALPRETDQESRDEGHQEVLRFALDQLSLMALEKVDC
GGGGGLVDTLDGTQAPGSEGYADLQVSRDSPTSCSPSPEYYGSVGYHMAGGGSHPMLHGE
QSSSVLCNRKRSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVF
IVTGRREDVEMAKREIVSAAEHFSMIRASRCKAGGSGGGGGSGGGGGSLPGPPHLPGQTT
IQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSREKDPVFEVTGMPENVDRAREEIE
THITLRTGTFVDLQGDNDFHTNGTDVSLEGLGALSSGLGASLWSRATNHHSAPPPPPPSP
PLAAIPMSVTRKMSSSVSYHAHNGGMSSEGYGGGRKGNDGASPTSPFSTGSSSAGGGFTF
GGDSTPLPSSDELGFEFSASNIWAPFVNGGNKSGGPSHPQPPLRRNSSGLSGGPITPRLS
PTLPQDAGAGPLEHPLARRAQSDPLSTLSWLQSGSAGGSGSGSGSFSGGSSSSSGGSSTG
YSSCSASSLPGGSPTDSEGGVGLSSGMLSRLKGGPGPGAVGLVGAGPGASRDCFVCFESE
VTAALVPCGHNLFCMECAGQICQSAEPECPVCHTPTTQCIRIFS
NT seq 1935 nt   +upstreamnt  +downstreamnt
atgcctagccctttattccacccggacataatggaccacgacgtggtgatcagcagccag
cacaatggggtcgctctgccccgagaaacggaccaggagtcccgggacgagggccaccaa
gaggtgctccgcttcgccctggaccagctgtcactcatggctctggagaaggtggactgt
ggaggcggaggcgggctggtcgacaccctggacgggacccaggcgcccggctcggagggc
tacgcggacctccaagtgtcccgggactcgccgacctcctgctccccttccccggagtac
tacggttcggtcggctaccacatggccggcggcggttcgcacccgatgctccacggggaa
caaagctcctccgtcctgtgcaaccgaaagagaagcgtcaacatgaccgagtgcgttccc
gtgcccagctcggagcatgtggcggagatcgtggggaggcaaggttgtaagatcaaagcc
ttgcgggccaagaccaacacttacataaagacgcccgtccgtggcgaggagcccgtgttc
atcgtgacgggacgcagggaggacgtggagatggccaagcgggagatcgtttctgcagcc
gagcacttctccatgatccgggcgtcccgttgcaaagcgggaggctccgggggaggaggg
gggagcggaggaggagggggctcgcttcctggaccaccgcacctccctggacaaacaacc
attcaggtgcgggtgccctacagagtggtgggtctagttgtgggccccaaaggagccacc
atcaagcgcatccagcagcagacccacacgtacatcgtgacgcccagtcgagagaaggac
cccgtgtttgaggtgaccggcatgcccgagaacgtggaccgagccagggaggaaattgag
acccacatcacgctgagaaccggaaccttcgtcgacctccagggggacaacgacttccac
acaaacggcacggatgtcagcctggagggcctgggcgccctcagcagcggcctgggggcg
tccctgtggtcccgggccaccaaccaccattccgcaccgccgccgcccccgccctctccg
ccgcttgccgccatccccatgtccgtaacccgcaagatgtcctcctctgtctcctaccac
gcgcacaacggtgggatgagctccgaagggtacggcgggggccgcaagggcaacgacggg
gccagccccaccagccccttcagcacgggttcaagtagcgctgggggcgggttcactttc
ggcggcgactccactccgcttccctcctcagacgaactgggctttgaattcagcgcttcc
aacatctgggcccccttcgtcaacggcggcaacaagtcgggcggcccctcgcatccgcag
ccgcctcttcgtcgcaacagcagcggcctgagcggcggccccattacgccgcggctgtcg
ccgacattgcctcaggacgcgggcgccggccccctggagcacccgctggcccgtcgcgcc
cagagcgaccccctgagcacgctctcctggctgcagtccggcagcgcggggggctcgggt
tccggctccggctccttctcggggggctccagctccagctcgggcggctcgtccaccggt
tactcctcctgctcggcgtcctcgctacccggcggctcccctaccgactcggagggcggc
gtgggtctcagctccgggatgctcagccggctgaaaggcgggccgggccccggcgcggtg
ggcctggtgggcgcggggcccggtgccagcagggactgcttcgtgtgcttcgagagcgag
gtgaccgccgccctggtgccctgcggccacaacctcttttgcatggagtgcgccgggcag
atctgccagtccgccgagcccgagtgccccgtgtgccacacgcccaccacgcagtgcatc
cgcatcttctcctaa

DBGET integrated database retrieval system