Syngnathoides biaculeatus (alligator pipefish): 133510904
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Entry
133510904 CDS
T09681
Symbol
copa
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sbia04131
]
133510904 (copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sbia04147
]
133510904 (copa)
Membrane trafficking [BR:
sbia04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
133510904 (copa)
Exosome [BR:
sbia04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
133510904 (copa)
Exosomal proteins of bladder cancer cells
133510904 (copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WDR55
TPR_COPA_B
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_Aladin
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
133510904
NCBI-ProteinID:
XP_061695354
LinkDB
All DBs
Position
13:8125372..8141856
Genome browser
AA seq
1222 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWVLASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVETD
VRGISGVDLFGASDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHERFWVLGAH
PNLNLFAAGHDSGMIVFKLERERPAYAVHGNMLYYVKERFLRQLDFNSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKVQVQSCEEIFYAGTGSLLLRDADGVTLFDVQQK
RSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYALISGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLTIDPTEYRFK
LALVNRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKALDERSCWEHLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM
KIAEIRKDMSGHYQAALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAEALKETFDP
EKETLPEVDPNAQLLQPPPPINPLDTNWPLLTVSKGFFEGVIAAKGKAGQMAADLDMDAA
GAQGWGDDAELQLDEDGFMDAQDGFGDEGGAKEDGGGWEVEEDLDLPPELDLPAGAGGST
EDGFFVPPTKGMSPTQMWCNNSQLPVDHILAGSFETAMRLLHDQVGVVNFGPYKSLFMQT
LSRGRTCYLALPSLPCLRGNPQRNWKDCGAKQGVPAVGLRLSDLIARLQQCYQLTTSGRF
EEAVERFRAILLSVPLLVVDNKQEIAEAQQLITICKEYIVGLTMETERKKLPKDTLDQQK
RLCEMAAYFTHCNLQPVHMVLVLRTALNLFFKLRNFKTAAAFARRLLELGPKPDVAQQTR
KIMAACEKSLTDAHQLNYDPHNPFDLCAASFVPLYRGRPVEKCPLSGACYCPQYKGQVCR
VTEVTEIGKDVIGLRVSPLQFR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgttgaccaaatttgaaaccaagtcggctcgtgttaaaggcctaagtttccacccaaag
aggccgtgggttcttgccagtttacacaacggtgtcatccagctatgggactatcgtatg
tgcacgctcattgacaagttcgacgagcatgatggcccagttcgaggaattgatttccac
aaacagcagcctctgtttgtgtccggaggagatgactacaaaatcaaggtgtggaactat
aagctgaggcgctgcctcttcaccttgctcggacacctggactacatcaggaccaccttc
ttccaccatgagtacccctggattctaagtgcctccgatgaccagaccattcgcatctgg
aactggcagtccaggacttgcgtctgtgtgctgacgggtcacaaccactacgttatgtgc
gcccagttccacccctcggaggacctggtggtgtcggccagcctggaccagactgtgcga
gtgtgggatatctccggtctgcggaagaagaacttgtcgcctggcgccgtggagacggat
gtccgcggcatttccggcgttgacctgttcggtgcctccgacgcagtcgtcaagcacgtg
cttgagggtcacgaccgaggcgtcaactgggccgccttccatcccagcatgcctctcatt
gtgtcaggtgctgatgataggcaggtcaagatctggaggatgaatgaatccaaggcgtgg
gagctggacacgtgccgtggccactacaacaacgtctcctgcgctgtgttccacccacgc
caggagctcatcctttcaaactcagaggacaagagcatacgggtgtgggacatgtccaag
aggactggcgtgcagacattccgccgggaccacgaacgcttctgggtgctgggcgcacac
cccaacctcaacctctttgctgctggccatgacagtggcatgattgttttcaaactggag
cgtgagcgtccggcgtacgccgtccatggcaacatgctctattacgtcaaggagcgcttc
ctgcgccagttggacttcaacagcagcaaggacactgccgtcatgcaactgcgcagcggc
tccaagtttccagtgttcagcatgtcttacaaccccgctgagaatgccgtgctactctgc
acgagggcgaccaatctggagaacagcacctacgacctatactccattcccaaagagagc
gactctcagaaccctgatgcacccgaagggaagcggtcctctggcctgaccgccgtgtgg
gtggcgaggaacagatttgccgtccttgaccgcatgcactctctactgatcaagaacctg
aaaaacgagattgtgaagaaagtgcaggtgcagagctgcgaggagatcttctacgccggc
accggctcgttgctcctgcgcgacgccgacggcgtgactctgtttgacgtgcagcagaag
cgctcactggccaccgtcaaaatcgccaaggtcaagtacgtggtgtggagcgccgacacc
agccacgtggcactcctggccaagcatgctattatgatatgcaaccgcaagcttgagagc
ctctgcaacatacacgagaacatccgagtgaagagcggagcctgggatgagagtggcgtc
ttcatttacaccacctccaaccacatcaaatatgccctcatctcaggggatcatggcatc
atcaggacgctggatctgcccatttacgtgacccgcgtgcgaggcaacagcgtgtactgt
ctggacagggagtgccggccgcgcgtcctcaccatcgaccccacagagtaccgcttcaaa
ctggcgctggttaaccgtaaatacgacgaggtgcttcacatggtccgtaatgccaagctg
gtgggccaatccatcattgcctacctgcagaagaaaggataccctgaggtggcattgcac
tttgtcaaagatgaaaagactcgcttcagccttgctctggagtgtgggaacatagaggtg
gcgctggaggcggcaaaggcgctggacgaacgcagctgctgggagcacctgggcgaggcg
gctctgttgcagggccaccaccaggtagtggagatgtgctaccagaggaccaagaacttc
gacaaactcaccttcctttacctcatcaccggcaacctggccaagttacgcaagatgatg
aaaatcgctgagattagaaaggacatgagtggacactaccaggcagctctctacttggga
gacgtcagcgagagagtccgcatcctgaagaactgcggtcagaagtctctggcttacctg
actgccgccacacacggactggatgaggaagccgaggcccttaaggagacgtttgatcca
gaaaaggagactttacctgaggtggatcccaatgctcagctccttcagccaccgcccccc
atcaaccccctcgacaccaactggcccttgctcactgtctccaagggcttcttcgagggt
gtcatcgccgccaaggggaaagcaggtcaaatggcggccgacctggacatggatgccgcc
ggagcgcaaggctggggagacgacgccgagcttcagctggatgaggatggcttcatggat
gctcaggatggttttggtgacgagggtggcgccaaagaggacggaggagggtgggaggtg
gaagaggacctggaccttccgccagagctggatttgccagccggcgcaggtggatcgact
gaggatggcttcttcgttccgcccaccaagggaatgagccccacacagatgtggtgtaac
aactcgcagctgcccgtggaccacatcttggccggctcctttgagaccgccatgagactg
ctccacgaccaagtcggagtcgtcaacttcggcccgtacaagtcgctcttcatgcagacg
ctttccaggggccgcacctgctacctggccctgccgtctctgccctgcctgcggggcaac
ccccagaggaactggaaggactgcggggccaaacagggggtcccggccgtgggcctccgt
ctgtccgacctcatcgcccgcctgcagcagtgctaccagctgaccacctccgggcgcttc
gaggaggccgtggagcgcttccgggccatcctgctgtcagtgccgctgctggtcgttgac
aacaagcaggagatcgctgaggctcagcagttgatcaccatttgcaaggagtacattgtg
ggtctgacaatggagacagagaggaagaaactgcccaaagacacactggatcagcagaag
agactctgtgagatggcggcctatttcacccactgcaacctccagccggtccacatggtg
ctggtgttgcgcaccgctctcaacctcttcttcaagctgcgcaacttcaagacggccgca
gcctttgcacgtcgcctgctcgagctcggccccaagcctgatgtcgcgcagcagacacgc
aagattatggcagcctgtgagaagagcctgacagacgcccaccagctgaactacgacccg
cacaatccgttcgacctgtgcgccgcctcctttgttccgctgtaccgaggccgtcctgtg
gagaaatgcccgctgtcgggcgcctgctactgcccccagtacaagggccaggtgtgccgg
gtcacagaggtgactgagattggcaaggatgtgattggtctgcgtgttagtccacttcag
ttccgttaa
DBGET
integrated database retrieval system
