Syngnathoides biaculeatus (alligator pipefish): 133510908
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Entry
133510908 CDS
T09681
Symbol
wdr33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133510908 (wdr33)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133510908 (wdr33)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
133510908 (wdr33)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WDR55
WD40_Gbeta
Beta-prop_IFT140_1st
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_Aladin
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
eIF2A
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR11_2nd
Beta-prop_SPT8
PEP5_VPS11_N
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
133510908
NCBI-ProteinID:
XP_061695366
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All DBs
Position
13:28235152..28255282
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AA seq
977 aa
AA seq
DB search
MATDVTSPPQRFFHMPRFQHQAPRQVFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDY
NPSVIRYLQNRQWQRDHRDLRAIQPDAGCYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVK
CPVFVIRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTA
DHGGYVKYWQSNMNNVKMFQAHKEAVREASFSPTDSKFATCSDDGTVRIWDFQRCHEERI
LRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKWNTN
GNWLLTASRDHLCKLFDIRNLKDELQVFRGHKKEATAVAWHPIHEGLFASGGSDGSLLFW
NAGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNL
LPGMSEDGVEYDDMEPNSMAAIPGMGIPEQLKVAMEQEQIHKEAGPEEMSIPGLDWGMDE
VMGKDNRKVPQKKVPYAKPIPAQFQQAWAENKVPTMAPSRDGPKERKAEPKVDGKKRSQV
ELEQEMAALQYTNPKLLEQQMKLERMNQKSSDGPQPGPGPMAPFSGSAGQQNFPPSQSNS
MGPSPMGPSFMPPAQMGSSSGHGQGMIGGPPDIQRHPAPLRNVGMGPGPRGMPGPHGGMM
GPPSRGMGPRAAQGPQPQQGGMMPPQGGMLAPLPRTHNNSFGMGGMHGLPGNMQGPPYMQ
HQAQTPGPPVHARGQQGPNSKDPRGPAPNHHMGPPDRQGPGGPEHYWGDDPHDPQDGGQD
FHSRAEEAWRPAPAFSGGSGHRVGGGPLRGGGAAGWGPEDRPPRDGGGEFRGRRDDRFRG
GPGRPGGRGYPEEYAGQEDAFDAHEDIRGWPRGRGGHDGYRDGHPLHDGASPAGRERSLS
LQGMDMASLPPRKRPWQDGPGTADHRERDAPGADAGRLPQRDDGIYGPPGRGARGGWGPG
LRRGGPPVRGAPRGRNR
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggacgtgacctcgccgccgcagcgcttcttccacatgccgcgcttccagcac
caggcgccgcgccaggtcttctacaagcggcccgacttcgcgcagcagcaggccatgcag
cagctcaccttcgacggcaagcgcatgaggaaggccgtcaaccgcaaaaccatcgactac
aacccctccgtcatcagatacctgcagaatcggcagtggcaacgagaccatcgcgacctg
cgagccatccaacccgacgccggatgctacaatgacttggttcctccgataggaatgctg
aacaaccccatgaacgccgtcaccaccaagtttgtgcgcacgtccaccaacaaagtcaaa
tgtcccgtctttgtcatccggtggactcctgaggggcgtcggctggtgacgggcgcgtcc
agcggcgagttcacgctgtggaacggactgacgttcaactttgagaccattttacaggcc
cacgacagtccggtgcgcgccatgacgtggtctcacaatgacatgtggatgctcacggcg
gatcacggcggctacgtcaagtactggcagtccaacatgaacaacgtgaagatgttccag
gcgcacaaggaggccgtgagagaagccagtttctcacccactgatagtaaattcgccacc
tgctcggatgacggcaccgtccggatttgggacttccagcgctgccacgaggagcgcatc
cttcgaggtcacggtgctgacgtcaagtgtgtggactggcaccccactaaagggctggtg
gtgtccggcagcaaagacagtcagcagccaatcaaattctgggaccccaagaccggacag
agtctggcaaccctacacgcccacaagaacacagtgatggaggtgaagtggaacaccaac
gggaactggctgctgacagcgtcgcgcgaccacctgtgcaaactctttgacatccgcaac
ctgaaggacgagctgcaggttttccgaggacacaaaaaggaagccacggcggtggcctgg
catcccatccacgaagggctgtttgccagcggaggctccgacggttctttgctcttctgg
aacgcgggggtggagaaggaagttggaggcatggagatggctcacgagggaatgatctgg
agtttggcctggcacccgctgggtcacatcctgtgctcgggctccaacgaccacaccagc
aaattctggaccaggaatcgtcccggcgacaaaatgagggaccgctacaacctcaacctt
ctacctggcatgtcggaggacggcgtggagtacgacgacatggagccgaacagcatggcg
gccatccccggaatgggcattcccgagcagctgaaggtcgccatggagcaggaacagatc
cataaggaggccggtccggaggagatgtccatcccgggcctggactggggcatggatgag
gtgatgggcaaggacaacaggaaggtcccccaaaagaaggtcccctacgccaagcccatc
ccggcgcagttccaacaggcctgggcggagaataaagttcccacgatggccccttcgcgg
gacggccccaaagagcgcaaggcggagcccaaagtggacggcaagaagagaagtcaagtg
gaactggagcaggaaatggcggcgctgcagtacaccaaccccaagctgctggagcagcag
atgaaactggaacgcatgaaccagaagagctcggacggcccccagccgggaccgggcccg
atggcccccttctcgggctccgccggacagcagaactttcctccctcccagtccaacagc
atgggcccctcccccatggggccttcgttcatgccccccgcccagatgggctcttcctcg
gggcacgggcagggcatgatagggggtccgccggacattcagaggcacccggcccccctc
aggaacgtcggcatggggcccggacccaggggaatgccgggtccgcacgggggaatgatg
gggcccccctccagagggatggggcctcgggccgcgcagggtcctcagccgcagcagggg
ggcatgatgcctcctcaagggggcatgctggcccccctgcccaggacacacaataatagc
tttgggatgggggggatgcacgggctcccgggtaacatgcagggccccccctacatgcag
caccaggctcagaccccgggaccccccgtgcatgccaggggccagcagggccccaacagc
aaagacccccgggggccggcccccaaccaccacatgggccctccggaccgccaaggcccg
gggggccccgagcactactggggcgacgacccgcacgatccgcaggacgggggccaggac
ttccacagccgcgcggaggaggcctggagacccgcacccgccttttccggggggtcgggg
caccgggtcgggggaggtcccctgcggggaggcggggcggccggctggggtcccgaagac
aggccgccccgagacggcgggggagagttcagagggcggcgagacgacaggttccgagga
ggcccggggcggcccggaggccgaggctaccccgaagaatacgccggccaagaggacgcg
tttgacgcccacgaagacatcaggggctggccacgcggcagaggaggtcacgacggctac
cgcgacggacaccccctccacgacggcgcgtccccggccggccgcgagcgctcgctgtcc
ctgcaggggatggacatggcgtccttgccgccgcggaaacgaccctggcaggacggaccc
ggaaccgccgaccaccgagaacgagacgcgccgggcgcagatgcaggtcgacttcctcag
cgcgacgacggcatctacgggccgcccggccgcggcgcccggggaggctgggggcccggc
ctcaggagaggggggccccccgtgcggggcgcgccgaggggccgcaaccgctag
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