Syngnathoides biaculeatus (alligator pipefish): 133511156
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Entry
133511156 CDS
T09681
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03013
Nucleocytoplasmic transport
sbia03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133511156
03015 mRNA surveillance pathway
133511156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133511156
Enzymes [BR:
sbia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133511156
5.6.2.5 RNA 5'-3' helicase
133511156
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133511156
mRNA cycle factors
Common to processing body (P body) and stress granule
133511156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
AAA_25
Motif
Other DBs
NCBI-GeneID:
133511156
NCBI-ProteinID:
XP_061695805
LinkDB
All DBs
Position
13:complement(12854404..12873617)
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQGQTQSQPDNQINSPG
CALQNGDDPMLNASHLLAELNFEEEEEDTYYSKDLPVHACSYCGIHDPACVVYCNTSKKW
FCNGRGNTSGSHIVNHLVRAKSKEVILHKDGPLGETVLECYNCGCRNVFLLGFIPAKADS
VVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQIN
KLEELWKENPSASLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKSEADYDKKLKES
QTQENITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKV
PDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSSLKTFAVDETSVSGYIYH
KLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA
TIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLSAKSREAIDSPVSFLALHN
QTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAGDP
RLAKMQFRSILIDESTQATEPECMVPAVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQS
LFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRVKKGFDFQWPQPD
KPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYL
VQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVAL
TRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTI
NPGGRFMSTAMYDAREALIPGSVYDRSSNGRTSNMYFQTHDQIGMIGTGPNPLTSLNIPI
PFSLVMPPIPPPGYMGHVNGPKSGRGGGMKGKAGTGGGGGARGSRPRKCSNHGGGYLGGS
QASQDQVSQTFSQGPLTQGYNNISQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcccagactctcacgtttctggacaccgaggaa
gccgagctcctcggagcagacacccagggctccgagtacgacttcaccgattttaccctg
cccagccagactcaaggacagacccagagtcagccagacaaccagattaacagtcctggg
tgtgcgttacaaaatggagacgaccctatgctgaatgcaagtcacttgctggcagagttg
aactttgaggaggaagaggaggacacctactactccaaggacctccccgtgcatgcttgc
agttactgtggaattcacgatccggcctgcgtggtctactgcaacaccagcaagaaatgg
ttctgtaatggccgtggaaacacctcgggcagtcacattgtgaaccatctggtgagggcg
aagtccaaggaggtgatcctgcataaagatggtcctctgggagaaacggtgctggagtgc
tacaactgcggttgtcgcaatgtctttctgcttggcttcatccctgctaaggcggactcc
gtggtggtgttactgtgcagacagccatgtgccagtcagagcagcctcaaggacatcaac
tgggacagctcccaatggcagcctctcattcaggaccggtgcttcctctcctggctggtc
aaaatcccgtcagagcaagagcagcttagggcccgacagatcacagcccagcagatcaac
aaattggaggagctgtggaaggagaatcccagtgcatcattggaagacctggagaagcct
ggggtagatgaggagccccaacatgtgttgctgcgctatgaggatgcctaccaataccag
aacatctttggtcctcttgtcaaatcggaggctgattatgataagaagctaaaagagtcc
cagactcaagagaatatcacagtcagatgggaccttggcctcaataaaaagagaattgcc
tattttaccctgcccaagactgactcagacatgcgactgatgcaaggagatgaaatctgc
ctgagatacaaaggggatctggcaccactttggaaaggcattggacatgttatcaaggtt
cctgataactacggcgatgagatcgccatcgagctaaggagcagtgctggagcgccagtg
gagattccacacaactttcaggtggactttgtgtggaagtccacatcctttgacaggatg
cagagttccctgaaaacatttgctgttgatgagacgtcagtgtcaggttacatctaccac
aaactgctgggccacgaggtggaagacgtggtcatcaagtgtcaactgcccaaacgcttc
actgctcaaggactgcctgacctaaatcactcccaagtgtatgcagtaaagaccgttcta
cagcgaccgctcagcctgattcaaggtccaccgggtactggaaagaccgtgacttctgcc
acaattgtgtaccacctggcccgacagggaaacggaccagtgctggtgtgtgctcccagt
aatattgctgtggaccagctgacagaaaagatccaccagaccgggctcaaagtggtgagg
ctgtctgccaagagcagggaagccattgactcgcctgtgtccttcctggctctacacaac
cagacccgtaacatggacagtatgcccgaacttcagaaactacaacagctaaaagacgag
actggagagttgtcatcctctgatgagaaacgttacagggctttgcgacgcaccgctgag
agggaactgttgatgaacgccgacgtaatctgctgcacgtgcgtcggggcaggtgaccct
cgcctggccaagatgcagttcagatcaatcctgattgacgagagcacacaggccaccgag
ccggagtgcatggtgcctgcggtgcttggagccaagcagttaattttagtgggtgaccac
tgccagctgggcccagtggtgatgtgcaagaaggcagctaaagcaggcttgtcccagtct
ctctttgagcgtctggtggttctggggatccgtccgatccgtctgcaggttcagtaccgc
atgcacccggccctcagtgccttcccctcaaacatcttttatgaaggctcactgcaaaat
ggagtcactgcaggcgaccgtgtgaagaaggggtttgacttccagtggccacagcctgac
aagccaatgttcttttatgtcacacaaggccaggaggaaattgccagctctggaacatca
tacctcaacagaacagaggcagctaatgtggagaaaatcacaacaaggttgctaaaggct
ggagccaaaccggatcagattggcatcatcaccccctatgaggggcagagatcctatctg
gtccagtacatgcagttcagtggctcccttcataccaagctttaccaggaggttgagatt
gccagtgtagatgcattccaaggcagagagaaagacttcatcatcttgtcttgcgtgagg
gccaatgagcatcagggcattggcttcctaaacgaccctcgtcgtctcaatgtggctctc
acgagagccaggtatggtgtgatcattgtgggcaaccctaaagctttgtccaagcagcca
ttatggaaccacctgctgaactactacaaggagcagaaggtgttggtggaagggcccctc
aacaacctgagagagagcctcatgcagttcagcaaacctcgcaagctggtcaacactatc
aaccctggcggtcgatttatgagcacagccatgtatgacgccagagaagccctcatccct
ggatctgtttatgatcgcagcagcaatgggcgcacatccaacatgtacttccagacccat
gaccagattggaatgattggtacgggccccaaccctttgacgtctttgaacatccctatc
cccttcagtctggtcatgcctcctatacctcctcctggctacatggggcacgtcaacggg
ccaaaatcaggtcgtggaggcggcatgaaggggaaagctggtactggaggagggggcggg
gcgcgtggtagtcgcccgagaaagtgtagcaaccacggcggagggtatctcgggggcagc
caggccagccaggaccaggtctcccaaaccttctcccagggccctctgacccaaggctac
aacaacataagtcagccatcgcagatgagccagcctgggctctctcagccggagctttcc
caggacagttaccttggagatgagttcaagtcccagattgatgtggcgctgtctcaggac
tccacctaccagggggagcgagcctaccagcatggtggtgtgactggactgtcccagtac
tag
DBGET
integrated database retrieval system
