Syngnathoides biaculeatus (alligator pipefish): 133511252
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Entry
133511252 CDS
T09681
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
FN3_Tor_3rd
DUF4959
YjeF_N
Motif
Other DBs
NCBI-GeneID:
133511252
NCBI-ProteinID:
XP_061695999
LinkDB
All DBs
Position
2:complement(20252524..20307311)
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AA seq
1582 aa
AA seq
DB search
MSLHQPASYSPSSLSFHWIMLHFLFIVLLLSSEVQCQGRLKLTVLSQDRLQMKWKETDGP
IQSYKVRIRPISDVPQPELMLTTTRGRATVAGLDSSQEYALQVLILNGTTEKLLAKRRFT
LDGLRQEEMIRSGQRRKLLPGGSGSEDLDDGTDALLALPTILYPDPVITTVATMNAEPPT
IEQSLPPLDEPQDKSTKEKKKRKKEKERDRFKVEIKDEQGMTVGKEEKTHKTPIPTQTVT
GPFPRKPFECNIDAAADIVFLVDGSWSIGRTNFRRVRDFLEGLMTPFRIGPQYIQIGLSQ
YSGDPRTEWELNNFTNKDQLVEAVRNFRYKGGNTFTGQALLHVMEENMRAEAGARSDTPF
FLVLLTDGKSQDDAIAAANRLKNAGVEIITVGVKNADEAELRQVASEPADANVYNVNDFP
LLSKLVARLVHILCGRIEDRGIIKQSEPEPTVNAALSYPSPTDLRFSNLGSREVMLHWTN
PTKPVQQYRVVYHSTEGSSPQEVVVDGLVSSVLLQGLSSQTLYHVSIFPVYENSVGLALR
GTVTTVPLSMPTNLEVMPSSYSKLRVSWAAAPGATEYLILYSALNDGEPDDAKEERFGAE
RTVLELASLLPATDYSVTLYALYDEDSSDPVTAIATTFPLPPPVSVHFPVVTHSMLRVSW
VPGAEDVPGHRITYSTNHGSDVKQVEVTGQSSVLVQSLSSLSRYLVSVRSHYPQGLSAAL
TSNITTLKVPSPSDLRVANFSSSKITVRWEAAADDVISYLIKWISLGGGDLRQMKVSGES
EGAILEGMEDDKEYQISLSALYGDGAQSEAVAIRYSTLSGGGPSSVSVSEETPVSMTVSW
VPPNAHVLQYRVSYSALTGAENRDGAVLVPGGEKHVVLDSLQPDTRYSILVTAEYRNKEG
GSGSTQGKTTSLRVSSVSVVRSDQSSICVSWRPLSIIDGYRIVVQSVKDKVSMEEIVDAS
SNTHCFSGLQAETVYRISVHSILGSAEGAAVSILHPTAQAPANIPVNPRIYPVHNEVCPE
VTIRNSIVKGFDMMEAFGLTPKAHSSVDGVAAEPFVFNTLPAYTLYRDIQLTQSTKFIHP
VGFSPEHTISITFRLLQETPKEPFALWQLTDNDFQPKMGVVLDPLTKQLVYLSLDYRGEV
QELTFDQPQVHKLFYGSFHKVHLSVSQVAVSLSVDCQRVGERPARPLGTLPTDGFEMLGK
LARTRGPKSGSAAFQLQSFEIVCNTTWAAEDPCCDLPALRDEESCPPLADSCTCSSDIPG
APGSPGPLGKPGPRGEKGNKGEQGHKGEMGPPGKPGLEGGLGAVGSRGLQGMAVQGKVGP
PGERGEKGDPGRAGLQGLPGPPGPKGEDGPPGPKGIRGVEGNMGPTGPTGSRGFQGMPGH
PGPTGERGFTGASGATGRPGSKGEQGQKGEPQSMAMIYQLVTEACEQLVHKEVRKLDILI
DDMSRKSAPVEEPVGPPGEPGVPGSRGPPGSRGTQGNIGPRGRPGKPGYPGEQGRPGLPG
PKGDIGANVQGPPGIRGHTGPLGESKIGTPGPKGENGKPGPPGLPGTPGQPGEIGPPGVC
DSSGGCHAVPQQAGDPYYGYQP
NT seq
4749 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttcaccaaccagcctcttactctccgtcctcattgtcatttcactggatcatg
ttgcatttcctatttatcgttctgctgctgtcatcagaagttcaatgccaaggtcgtctt
aagcttacagtgctgtctcaagacagactccagatgaaatggaaagaaacggatggaccc
attcagagctacaaggtccgaataagacctatctcagatgtgccgcagccagagctcatg
ttgaccaccacacgggggcgggcaaccgttgccggactggactccagtcaggagtatgcc
ctccaagttctcatacttaatgggaccacggagaaacttctggcaaagcgacgattcacc
ttggatggcctacgccaggaggagatgatccgtagtggtcaaaggaggaagctgttgcca
ggagggtctggatcagaagacctggatgatggtacggatgctctgctggctctgcctacc
attctttatccagaccctgttatcacaactgtggctacaatgaatgcagagccgccaact
atagaacagtctctcccgcctttggacgagccccaggacaaatccaccaaggagaaaaag
aagaggaagaaagaaaaagagcgagaccgttttaaggtggaaatcaaggatgaacagggg
atgacagtgggcaaagaggagaaaacacacaaaacaccgattcccacccagacggttaca
ggtccatttccgaggaaacctttcgagtgcaacattgatgctgcggcagacattgtgttt
ttggtggatggctcctggagcattggacgcactaacttccggcgggttagggacttcttg
gaggggctgatgacacctttccgtatcggaccacaatacattcagattggtcttagccag
tatagtggagatcctcgaacagagtgggagctgaacaacttcaccaataaagaccaactg
gtagaggcagtcaggaatttcaggtataagggaggaaacactttcacaggccaagcattg
ctccacgtcatggaggagaacatgagggccgaagcaggcgcaaggtctgacacacccttc
ttccttgtgctcttgacggatggtaaatcacaggatgacgccatcgcggcagcaaaccga
ctgaagaatgcgggagtggaaatcatcactgtaggtgttaagaatgccgatgaagcagag
ttgaggcaagtggcttcagagccggcagatgcgaacgtgtacaacgtcaatgacttcccg
ctgctcagcaaactggtggcccgactcgtccacatcctgtgcgggaggatcgaggaccgt
ggaatcataaaacaaagtgaaccagagcccacagtaaacgcggccctctcttacccgagt
cccactgaccttcggttctccaacctgggttccagagaggtgatgttacactggaccaac
ccaacaaagccagtccagcaatacagggtggtttaccacagtactgagggttcaagtcct
caggaggtggtggtggatggcttagtgtcttctgtgctgctccaaggcctctcctctcag
acactgtatcatgtgtccattttccctgtgtatgaaaacagcgttggcctggcactcagg
ggaacagtcaccacagtaccactctctatgccaaccaacctggaggtgatgccttcctct
tatagcaaactgcgagtgagctgggctgcagcaccgggggccactgagtacctgatcctc
tactcagcactcaacgatggagagcctgatgatgccaaggaggagaggtttggtgcggag
cggacagtcttggagctggccagtttacttcctgcaacggactactcagtcacgctttat
gctctctatgatgaagattccagtgatccggtcactgctatcgctacgacatttcctctc
cctccacctgtgagcgtgcacttcccagtggtaactcacagtatgctgagggtgagctgg
gtacctggagctgaggatgtccccgggcacagaataacttacagcactaaccatggcagt
gacgtaaagcaggtggaggtaactggacaaagctcagtgctggtgcagagcctgtcctct
ctgtccaggtatctggtgtcggtcaggtctcactacccacaaggcctttctgcagccctc
accagtaacatcactactttgaaagtaccctccccttctgacctaagggtggccaatttt
tccagtagcaaaatcaccgtacgttgggaggccgccgctgatgatgtaatctcgtacctc
atcaagtggatctccctaggtggaggtgacttgagacagatgaaggtgagtggagagagt
gaaggggccatcctggaggggatggaggatgacaaagaataccaaatctcgctgtctgca
ttatatggagatggagctcaaagtgaagctgtggctatacgctatagcacgttgtctggt
ggaggcccgtccagtgtctctgtctccgaggaaacaccggtcagcatgacggtcagctgg
gttccccccaacgctcatgtcttgcagtatcgtgtctcttacagtgcactgacaggagct
gagaatcgggacggcgctgtgttggtgccaggtggtgaaaagcatgtggtgctggactct
ttgcagccagacacacgatacagcatcctggtcacggccgagtaccgtaacaaagaagga
ggcagtggctcaactcagggcaaaaccaccagtctacgagttagcagcgtgagtgttgtg
cgatcagaccaatccagtatctgtgtttcttggagacccctgtcaattattgatggctac
cgtattgtcgttcagtctgtcaaagacaaagtctcaatggaagaaattgtagatgcgtcc
agcaacactcattgtttcagcgggctacaggctgagaccgtgtaccgcatcagtgtgcac
tcaattcttggatcagcagaaggtgctgctgtctccattctacatccaacagctcaagcc
ccagctaatattcctgtcaatcctcggatttaccctgttcataatgaagtttgtcctgaa
gtcaccatcagaaacagcattgttaaaggctttgacatgatggaagcgtttggcctcact
ccgaaagctcactcgtctgtggatggggtcgccgcagagccttttgtattcaacacgctg
cccgcctacaccttgtacagagatatccaattgacgcaaagtaccaagttcatccaccct
gtaggcttctcccccgaacataccataagcatcaccttccgcctgctgcaggaaacaccc
aaagagccctttgccctttggcagctcactgataatgacttccagcccaagatgggagtg
gtgctggacccattgaccaagcagctggtgtacttaagtctggattacagaggagaagtg
caagagttgacctttgaccagccacaggtccataagctgttctatggtagttttcacaag
gttcacctttcagtcagccaggtggccgtctccttatcggtggattgccagcgtgtgggt
gagaggcccgctcgccctcttggcacgcttcctactgacggctttgagatgctggggaaa
ctggcgaggaccagaggaccgaaaagtggctctgctgctttccagttgcagtcatttgag
atagtatgtaacacaacgtgggctgcagaggacccctgctgcgatctgcctgcactgaga
gacgaggaaagttgtcctcctttggccgactcgtgtacctgctcctctgacataccagga
gctcctggttcccctggtcctttgggtaaacctggtccccgtggtgagaaaggaaataag
ggtgaacaaggacacaagggtgaaatgggtcctccaggaaaacctggacttgaggggggt
cttggagcggtgggcagcagagggcttcagggaatggctgtgcaagggaaagtaggtcca
cctggggaaagaggagaaaagggcgacccaggaagagctggactacagggtctacctggc
cccccaggtccaaaaggtgaagatggtccgccaggccccaagggcattcgaggtgtggaa
ggcaacatgggccccactggccccactggatcaaggggcttccaagggatgccaggacac
ccgggacccactggggagagaggcttcaccggtgctagcggggctacgggtcgtcccggg
agtaaaggtgaacaaggacagaagggagagcctcagtccatggccatgatctaccagctt
gtcacagaagcgtgtgaacaacttgttcacaaggaggttaggaagttggacatattgatc
gacgacatgagccggaagtccgctcctgtggaggagcccgtggggcctccaggggagcca
ggagtaccgggttccaggggtccaccaggatcaaggggcacccagggaaatattggcccc
cgagggagacctggaaaacctgggtatcccggagaacaaggaaggccagggttgccaggg
ccaaaaggtgatataggggccaatgtacagggacccccagggatcagagggcatacaggt
cctctgggtgagtccaagattggaacccctgggccaaaaggagaaaatggaaagccagga
ccaccggggctgcccggaactcccggccagccgggcgagatcggaccaccaggagtgtgt
gacagcagtggagggtgccacgcagttcctcagcaagcgggagacccttattatgggtac
cagccttga
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integrated database retrieval system
