Syngnathoides biaculeatus (alligator pipefish): 133511345
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Entry
133511345 CDS
T09681
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sbia01009
]
133511345 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133511345 (hdac6)
04131 Membrane trafficking [BR:
sbia04131
]
133511345 (hdac6)
03036 Chromosome and associated proteins [BR:
sbia03036
]
133511345 (hdac6)
Enzymes [BR:
sbia01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
133511345 (hdac6)
Protein phosphatases and associated proteins [BR:
sbia01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133511345 (hdac6)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
133511345 (hdac6)
Membrane trafficking [BR:
sbia04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
133511345 (hdac6)
Chromosome and associated proteins [BR:
sbia03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
133511345 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
CMI2B-like
Motif
Other DBs
NCBI-GeneID:
133511345
NCBI-ProteinID:
XP_061696150
LinkDB
All DBs
Position
2:complement(20461052..20488425)
Genome browser
AA seq
1106 aa
AA seq
DB search
MSSESDHPPSSASSFGLKPVRRSPRLSPQGGTDQRDKHRKKVANLQEVKKKGRMSKSHKE
RDEELQVQLQKLDLSRRSSASGTGLVYSETFTRHQNLWDSNHPESPDRVTTIMEELDRQE
LLSRCIRVEPRSATDEELLLVHTKQYIDLIKSTQKMSETELRLLSDKYDSIYIHPETFQV
SILAVGSVLQLVDQVLTSELRNGFAVIRPPGHHAQSNEANGFCIFNNVAIAARYAQNKHR
VKRVLIVDWDVHHGQGIQYAFQEDPSVLYMSVHRFEQGAFWPHLPESDNTFVGCAPAEGR
NINLAWTTAGKSDADYVCAFQQLLLPVAYEFQPELVLVSAGFDAALGDPKVRQGRSGNGS
GLVTSLLGCHLRVGQMCVSPECFQTLTRMLMSLAEGRLILALEGGYNLQSTAEGSSACVR
ALLGEACAPMTPSTAPSDCALKSISETVSALYPYWTSLQVLEGDGLAEGCVLRETTPSES
PQIPAVTKTGLVYDERMMEHLNLWDRHHPEQPQRIFKIFSRHQQLGLVERCLRIPARFAT
EEELAMCHTYVAASLFVAHIQQMKSTSTMKSKDLYKLGQEFNSIFINSQSYQSALLAAGS
CFNAVDQILTGQVRSGVAIVRPPGHHAESDSACGFCFFNTAALAARYAQKISEHAHLRVL
MLDWDVHHGNGTQHMFEDDNSVLYISLHRYDNGTFFPSSEDASPDRVGVAQGKGFNVNVA
WSGGRMGDADYLAAFHQVVMPIATEFNPSLVLVSAGFDAARGDPLGGYHVTPEGYAHLTH
MLMSLACGRVLLILEGGYNLTSISDSMAMCTSMLLGDPPPFLAMPLLPPHHAAVTSINEV
IRHHAPYWKSLRIKIPESVRAAVTSRSPHRRRSGKGKDRKSRLSGPDKPTMGMEGTPADH
SLDQLTQGLASLDINQSTHGSEVEAASEKTQSRATSGESSTQQSQSEESSQPPAVIVDAQ
AVVDLGDELEPAGACGWSKPQEILELTCGVQMAPMYVVDPLSSCPHLDAVKPLPPSGIDV
FLPCHDCGSEVENWICLTCYKVACGRYVNEHMLAHGETSHHPMVLSFCDLSVWCYVCEAY
VHNQAVFEAKNAAHSAKFGEEIPPWS
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctgaatcagatcacccgccatcatcggcatcatcatttggactaaagccagtt
aggaggtctcctcgtctgtcccctcagggagggacggatcaacgagacaaacacagaaag
aaagttgccaacctgcaagaggtgaagaagaaagggagaatgtcgaagagtcacaaggag
cgagacgaggagctgcaggtccaactgcagaagctggacctgtccaggaggtcgtctgcc
agtgggacaggtttggtctattcggagaccttcactcgtcatcagaacctgtgggactcc
aatcatccagaaagtcccgacagagtgacaaccatcatggaggagctggacagacaggag
ctgttgtctcgctgcattcgagtagagcccagatcagccactgatgaagagctgcttctg
gtgcacacaaagcagtacatcgatttgattaagtccactcagaaaatgtcagagacagaa
ctacgtcttctctctgacaaatatgattccatttatatccatccagaaaccttccaagtc
tcaatattggcggtgggttcagtgctccagctggtagaccaagtgttgacgtctgaactg
aggaacggctttgctgtcatcaggcctccaggacatcacgctcagtcaaacgaggccaac
ggtttttgtattttcaacaatgtggccattgcagctcgttacgctcagaacaagcatcgt
gtcaaaagggtgttgatcgtggactgggatgttcatcatggtcaaggtatccagtatgct
ttccaggaagaccccagtgtgttgtacatgagcgtccacaggttcgagcaaggtgcgttc
tggcctcacctgcctgagtcagacaatacttttgtgggctgtgcccccgccgaaggacgg
aacatcaacctggcctggaccacggcaggaaaaagcgacgctgactacgtgtgtgctttc
cagcaattgctgctaccagtcgcctacgagtttcagccggagcttgttttggtttccgct
ggttttgatgccgcgttgggggatcccaaggtacgacagggcagatctggaaacggtagt
ggactggtgacgtcactacttggctgtcatttgcgtgttggccagatgtgcgtcagtcct
gagtgtttccagacattgacacgcatgctgatgtctttggcagaaggtcgactcattctg
gctctcgagggaggctataacctgcaatcgacagcagagggttctagtgcttgtgttcga
gcgctccttggtgaggcctgtgccccaatgactccatccactgctccttctgactgtgcc
ttgaagtccatttctgagacagtctcagctctgtatccatactggacctcactgcaagtg
ctggagggtgacgggcttgctgaaggatgtgtcctcagagaaacaactcctagcgagagc
ccacagattcccgctgtgactaaaacaggcctggtgtatgacgagagaatgatggagcat
cttaacctgtgggacaggcaccatcctgaacagccacaaagaatcttcaagatcttctcc
aggcatcagcaactcggactggtggaacgttgtctgcgcatcccggctcgcttcgcgact
gaggaggagcttgccatgtgtcacacgtacgtggcagcatccctgtttgtggcccacatt
cagcagatgaagtccaccagtacgatgaagagcaaagatctgtacaaattgggacaagag
ttcaactccatcttcattaacagtcagagttaccagtcagccctgctggctgctggaagc
tgcttcaatgctgtggaccagatcctgaccggacaggtgagaagtggtgtcgccatcgtg
cgccccccaggtcatcatgccgagagcgactctgcttgtggtttttgtttcttcaacacg
gcggcactcgccgctcgctatgctcagaagatctctgagcatgcgcatttacgagtctta
atgctggactgggatgttcaccatggcaatggcacacagcacatgtttgaagatgacaac
agcgtcctgtatatctccctccatcgttatgacaacgggaccttcttcccgtcctcagag
gatgcctccccagatcgagtgggcgtggctcaggggaaaggcttcaacgtcaacgtggcg
tggagtggcgggcggatgggggacgctgactatcttgcagcctttcaccaagttgtcatg
ccgattgccactgagtttaatccgagtctggtgttggtgtcagcgggatttgacgccgcg
cggggagacccactggggggataccacgtgacgccggagggctatgcccatctcacccac
atgctgatgtctttggcttgtgggcgggtcttactcatactggagggtggttacaacttg
acgtccatctcagactccatggcgatgtgcacaagcatgttgcttggcgaccctcctcct
ttcctggcgatgcccctccttccgcctcaccacgccgccgtgacatccatcaatgaggtc
atccgccaccacgccccctactggaagtcgctgagaataaaaatcccagagtccgtgcga
gcagccgtaacttccagaagccctcatcgcagacgcagtgggaaagggaaagacaggaag
tcaagactgagtggtccagacaagccgacgatgggaatggagggcacaccggcggaccac
agtttggatcagctcactcagggattggccagtttggacatcaatcaaagcacacacggc
tcagaagtggaagcggcatcagagaagacccagtcgagggccacgtcaggtgaatcttca
actcagcagagccaatcagaagagagctcgcagcctccagctgtcattgttgatgcacaa
gcagttgttgatctcggagacgagctggagccggcaggagcgtgtggttggtccaagcct
caagaaatactggagctgacgtgtggagttcagatggcccccatgtatgtggtggaccct
ctttcctcatgtcctcacctggacgccgtcaagcccctgcccccatctggtatcgatgtc
ttcctgccctgtcacgactgtggctcagaggtggagaactggatctgcctcacctgctac
aaggtggcgtgtggccgctacgtcaacgagcacatgttggcacatggcgagacgtcccat
catcccatggtgctgagcttctgcgatctttctgtgtggtgctacgtgtgcgaggcctac
gtacacaaccaggccgtgtttgaggcaaagaacgcagcccacagcgccaagtttggagag
gagataccaccctggagttag
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integrated database retrieval system
