Syngnathoides biaculeatus (alligator pipefish): 133511729
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Entry
133511729 CDS
T09681
Name
(RefSeq) ATP-dependent RNA helicase DDX19B-like
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03013
Nucleocytoplasmic transport
sbia03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133511729
03015 mRNA surveillance pathway
133511729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133511729
Enzymes [BR:
sbia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133511729
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133511729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Motif
Other DBs
NCBI-GeneID:
133511729
NCBI-ProteinID:
XP_061696581
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All DBs
Position
2:21715660..21725520
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AA seq
486 aa
AA seq
DB search
MFKDSWAHEADVQETHRPRVQFDPTKKMALVNRPRNISRDVNGNFDKEISRQQQNWEGDK
VDLAEVSLLNKIIRRNLVRSRQEVEVLQRDPTSPLFSVKTFEELRLKPELLTGVYDMGFN
RPSMIQEKALPMMLAQPHQNLIAQSQSGTGKTAAFALAMLSHVNPANKWTQALCVAPTYE
LALQIGQVMEQMGKHCPDIKLAYGIRGNKVERGSELQEQIVVGTPGTILDWCIKLKVIQP
KKITMFVLDEADVMIDTQGHRDQSIRIHRQLPKDCQMLLFSATFEEEVWRFAEMIVPEAN
IIRLRREEETLDTIKQFYVLCGSKEDKFNILCDLYGSMTVAQAMIFCRTRKIALWLSANL
TKEGHSVALLSGELTVMQRACIIERFRDGKEKVLVTTNVCSRGIDVEQVSLVVNFDLPVD
MDGKADNETYLHRIGRTGRFGRRGFAINMVDSQHGMDVIRQIENHFDKKIPKLDTGNIEE
IEKQLN
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaggactcgtgggcgcacgaggctgatgtgcaggagacacaccgtcctcgcgtg
cagtttgaccccacgaaaaagatggctctggtgaatcgtccacggaacatcagcagagat
gtaaacggaaacttcgacaaggagataagcagacagcaacaaaattgggaaggagacaaa
gtggacctggctgaagtatccctgctgaataaaattatccgccgcaatctagtgaggagt
agacaggaggtggaggtcctgcagcgggacccgacctctccgctcttctccgtcaagacc
ttcgaggagctgcgcctgaaaccggagctgttgacaggggtctatgacatgggcttcaac
aggccttccatgatccaggagaaggctctacctatgatgctggcacagccacatcagaat
ctgatcgcccagtcacagtcaggcacaggcaagactgctgcttttgctctggccatgctt
agtcacgtgaaccctgcaaacaagtggactcaggctctttgcgtcgcgcccacatacgaa
cttgccctacagattggtcaggtgatggagcagatgggcaaacactgccctgacatcaaa
ctggcatacggcatcagaggcaacaaagtggaacgaggcagtgagttgcaggaacaaatc
gtcgtgggaacaccgggcaccatcctggactggtgcattaaattgaaagtaattcagccc
aaaaagataaccatgtttgtgctggatgaggccgacgttatgatcgacactcagggccat
cgtgaccagagcatccgcatccacaggcagctgccaaaagactgccagatgctccttttc
tctgcgacctttgaggaggaggtttggaggtttgcggagatgatagttcccgaggccaac
atcatccgactgcggcgtgaggaggagactcttgacaccatcaagcagttttacgtcctc
tgcgggagcaaggaggacaagttcaacattctgtgtgacctctacgggagtatgactgtc
gcacaggctatgattttctgccgtacccgtaaaattgcattgtggctgtctgctaacctg
accaaggagggccacagtgtggcgctgctgagtggggagttgactgtgatgcaaagagct
tgcatcattgaacgctttcgagatggcaaggagaaggttcttgtcaccacaaacgtttgt
tccaggggcatcgatgttgaacaggtatcactggtggtaaactttgacctccctgtggac
atggatggcaaagccgataatgagacataccttcaccgcattggccgcacggggcgtttt
ggaaggcgaggcttcgccatcaacatggtggacagccagcacggaatggatgtcatcaga
caaatcgagaaccattttgataagaaaatccccaaacttgacacagggaatattgaagaa
atagaaaaacaactgaactga
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