Syngnathoides biaculeatus (alligator pipefish): 133512046
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Entry
133512046 CDS
T09681
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03013
Nucleocytoplasmic transport
sbia03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133512046 (upf3a)
03015 mRNA surveillance pathway
133512046 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133512046 (upf3a)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133512046 (upf3a)
mRNA cycle factors
P-body specific factors
133512046 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
133512046
NCBI-ProteinID:
XP_061697266
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All DBs
Position
14:27762729..27771477
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AA seq
468 aa
AA seq
DB search
MRSDKEQMTAGKDKGGAEIKFGDASGDQDNLPKHKEEKKELFTKVVIRRLPPQLTKEQLE
EQLSPLPPYDYFEFSPADPSLYPHLFSRAYVNFKNQEDIVLFRDRFDGYVFIDGKGQEFP
AVVEFAPFQKVSKKKLKKKDAKAGSIDEDLEYKRFLENYSCDEEKSMANPETLLGEIEAK
TRELIAKRTTPLLEYIRNKKMEKQRMREEKREERRRREFEKKRQREEEKRKRREEERRKR
KEADKQKKMSDKDVKIKLLKKSDRDDDADSDRGKDKSDFGEADRGKWDKAGAHVKSKDSK
EKSQPESDKEQQQCRRQRAKDDDRKRQRHHYDFDKFARRKDETKWGKGYCAKKESHHHHH
HQQQQQQQQQHAFAFCPDGGDKRAKDDRDELANRKERLRNKVSEKDRPAMQLYQPGARNR
KGLNSACKSHDCAPAGHSPEGEAGLCFDAEAAPDKTSDNGNDERRGPS
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaggtccgacaaggagcaaatgacggccggcaaggacaagggcggcgcggagatcaag
ttcggggacgcctcgggggaccaggacaacctccccaagcacaaagaagagaagaaggag
cttttcaccaaggtggtgattcgcaggctccccccccagctgaccaaggagcagttggaa
gagcaactcagcccgcttcctccctacgactactttgagttctcgcccgccgacccgagc
ctgtacccgcatttgttctccagagcctacgtcaactttaaaaaccaggaagacatcgtc
ctgttccgagacagatttgacggctacgtcttcatcgacggcaaaggtcaggagtttccc
gctgtggtagaatttgcccccttccagaaagtctccaaaaagaagctgaaaaagaaagat
gccaaagccgggagcatcgacgaagacctggaatataaacgcttcctggagaactactcc
tgcgatgaggagaagtccatggccaacccggagaccctgctgggggaaatcgaggccaaa
accagagaactgatcgccaaaaggacgacgcccctcttagagtacatcagaaacaagaaa
atggagaaacagagaatgcgagaggaaaagcgagaggagcgtcggcggcgagagttcgag
aagaagcgacaacgcgaggaggagaaacgcaagcggcgcgaggaggaaaggcgcaagcgc
aaagaagccgacaagcagaagaagatgtccgacaaagacgtcaaaatcaagctgctgaag
aagagcgaccgggacgacgacgccgactcggaccgcggcaaggacaaaagcgactttggc
gaggcggacagaggaaagtgggacaaagctggcgcgcacgtcaagtccaaggactccaag
gaaaaatctcagccggagagcgacaaggagcagcagcagtgccgccggcagcgcgccaaa
gacgacgacaggaagcgccagaggcaccactacgactttgacaagttcgcgcggcgcaaa
gacgagaccaagtggggcaaaggctactgcgccaagaaggaatcgcaccaccaccaccac
caccagcagcagcagcagcagcagcagcagcacgccttcgccttctgccccgacggcggc
gacaagcgggccaaggacgacagggacgagctggccaacaggaaggagcgcctgcgaaac
aaggtgagcgagaaggaccgcccggccatgcagctgtaccagcccggggcgcgaaatcgc
aaaggcctcaactccgcctgcaagagccacgactgcgcgccggcgggccactcgcccgag
ggcgaggcgggcctctgcttcgacgccgaggcggcgccggacaaaacctcggacaacggc
aacgacgagcggcgcggaccctcgtga
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