Syngnathoides biaculeatus (alligator pipefish): 133512223
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Entry
133512223 CDS
T09681
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a isoform X1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sbia03000
]
133512223 (sox1a)
Transcription factors [BR:
sbia03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
133512223 (sox1a)
SSDB
Ortholog
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
133512223
NCBI-ProteinID:
XP_061697627
LinkDB
All DBs
Position
14:25646585..25741680
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AA seq
388 aa
AA seq
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MYSMMMETDLHSPGPQTNTAAGPTGPNAGSKASQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGAGGGGGGGVGLGVGVASSSAGQRLESPGAPHGGSAGAGYAHMNGWANGAY
SGQVAAAAAAAAMMQEAHLAFGQHPGGGAHHLNHHHHHAHPHAHHAHHHAHHHHAHNPQP
VHRYDMSALQYSPISNSQSYMSASPSGYGALGYAQHQGSAVSSSSSSSSSSSAAAAAAAA
AAAAASSSMGALGTLGSLVKSEPSVSPPVSGGPHARGPCPGDLREMISMYLPTGEPADAV
MQSRLHALPAHYQSAAAGVNGTVPLTHI
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatgatggagaccgacctgcactcccccgggccccagaccaacacggcc
gcggggccgacggggcccaacgcgggctccaaggcgagccaggagcgggtgaagagaccc
atgaacgccttcatggtgtggtcgcgcggccagcgcaggaagatggcgcaggagaacccc
aaaatgcacaactccgagatcagcaagaggctgggggccgagtggaaggtgatgtccgag
gcggagaagcggcccttcatcgacgaggccaagaggctgcgggccatgcacatgaaggag
cacccggattacaagtaccggcccaggcggaagaccaagacgctgctcaagaaggacaag
tactcgctggccggcgggctgctctccggggccggcggcggcggcggcgggggagtgggc
ttgggggtcggcgtggcgtcttcctcggcgggccagcggctggagagccccggggcgccc
cacggaggctccgcgggggcgggctacgcgcacatgaacggctgggccaacggcgcctac
tcgggtcaggtggccgcggccgcggcggccgccgccatgatgcaggaggcgcacctcgcc
ttcggccagcacccgggcggaggcgcgcaccacctcaaccaccaccaccaccacgcgcac
ccgcacgcccaccacgcgcaccaccacgcgcaccaccaccacgcgcacaacccgcagccg
gtgcaccgctacgacatgagcgcgctccagtacagccccatctcgaactcgcagagctac
atgagcgcgtccccgtccggctacggcgccctcggctacgcgcagcaccagggctccgcc
gtgtcctcgtcgtcgtcctcctcttcgtcgtcgtccgccgccgccgccgccgccgccgcc
gcggccgccgccgcctcctcctcaatgggcgctctgggcacgctgggctcgctggtcaaa
tcggaacccagcgtcagcccgccggtgagcgggggtccgcacgcgcggggtccctgtccc
ggggacttgcgggagatgatcagcatgtacttacccaccggggagccggcggacgcggtc
atgcagagccggctgcacgccttgccggcgcactaccagagcgccgcggcgggcgtcaac
gggacggtcccgctcacgcacatctga
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