Syngnathoides biaculeatus (alligator pipefish): 133512270
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Entry
133512270 CDS
T09681
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04622
RIG-I-like receptor signaling pathway
sbia05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
133512270 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
133512270 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sbia04054
]
133512270 (ifih1)
Enzymes [BR:
sbia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133512270 (ifih1)
Pattern recognition receptors [BR:
sbia04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
133512270 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
DEAD
Helicase_C
ResIII
CARD
SWI2_SNF2
AAA_22
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
133512270
NCBI-ProteinID:
XP_061697716
LinkDB
All DBs
Position
14:13134646..13157854
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AA seq
970 aa
AA seq
DB search
MSSDQNDLINENLIESFRPRLRVYVAVDPVLDHLHFFEHELKERVRQKARTDGDSAAVDV
LVDAVLRKPHPKGWFQAFVDALSNAECKLAADYMRGKPPDAEVEDQNDNCMRMIDILAPS
LVGMDTKEVCTHCLSHQLITRDDQDKILHLADNQGLRDAARELLKRILRCPPGWYSKFLQ
ILLDTEHNDLYELLEGSTDNSTTAKDETERNDRVKEKVSEESSALNKDDCDNSIDLYQGD
PPQDDATHKFSSLELLPPELCDSGAAAGGPDKVDIVLRKYQMDVAKPALEGKNIIICLPT
GSGKTRIAVYVTREHLDHRRAEGKTGKVVILVNLVPLVEQHYATEFHRFLKHAYKVERVS
GNSVLKISFTEIMKKNDIVICTAQILENYLERSVKGEDEGVHLKDITLIIIDECHHTNKG
EVYNRVMMRYLRQKEKNRILKKDQKETVPLPQILGLTATLGVGGATKLKTAENNILQFCA
NLDASEIQTGNLEDNSNEPDKQIVLVANKEQDPFGDVIKRIMHNIQIDANLSPTCDLGSQ
NYEQWVVQSEQQAAKEGAQELRVCLKHLRWYNNALILSNTIRMCDAFSFLNKHHEEELKS
KTSPDDEHVINITDTERVLFNLFQDNKEELQKLSENQANENYSLSKLRQSILYQFTTRDE
ARGIIFTKTRLSAIALSHWIQKNSKFADVGINVSYLIGGGDQSVVKPMTAAEQKDVLNRF
RNGAVNLLVATSVAQEGLDIPACNFVICYGLVTNEIAMIQAQGRARAEDSSYIVIEVKGS
GVTEKETVNEYRKDLMAKAIARIQALDPAEYINRIKEFQSEAIVRSKFRNRNKNIKPQDP
SEVKLSCRQCSKIVCTCDDIQIIGDMHHVNVSSEFSELFIEKENNSQERLLEYEPHASIA
CKDCGQKWGTMMMYRGIPCPRLQVKNFVVTIKEKKFSKFTKWHELHMKFQPFDYIEHATR
LAQWSDDEDV
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctgaccagaacgacttgattaatgagaatttaatcgaaagctttcggccgagg
ctccgagtctacgtcgcggtggatccggttctggaccacctccatttcttcgaacacgaa
ctgaaagaacgcgtccgacaaaaggccaggacagatggcgactcggcggcggtggacgtc
ctcgtcgacgccgtcctgcgcaagccgcacccgaaaggctggttccaagccttcgtggac
gccttgtccaacgccgaatgcaaactagcggccgactacatgcgggggaagccgcccgac
gccgaggtggaagatcaaaacgacaactgtatgcgaatgattgacatcctggcgcccagt
ctggtgggcatggacactaaagaggtgtgcacgcactgtctttcgcaccaactcatcacc
agagatgaccaagacaaaatcctgcacttagcagacaatcaaggactcagagatgcggct
cgtgaacttctgaaaagaattctgaggtgtcccccaggatggtactcaaaatttctccaa
attctgcttgatactgagcacaatgacttgtatgaactattggaaggctccactgacaac
agtacaacagcaaaagacgagactgaaagaaatgacagagtcaaggagaaggttagtgaa
gaaagttctgctttgaacaaggacgattgtgacaactccatagacctgtaccagggtgac
cccccgcaagacgatgccacacacaagttcagcagtttagagcttttaccaccagaactg
tgtgactcgggcgcagctgctggaggcccagacaaagttgatattgttcttagaaaatat
cagatggacgtggctaaacctgccttagaggggaaaaacataatcatatgcctaccaact
ggaagtggtaaaaccaggatagcggtttatgttacccgtgaacatctggaccacaggaga
gccgaggggaaaaccggcaaagtggtcatcctggtgaacctggttccccttgttgagcag
cattatgccacagagttccatcgctttctgaagcacgcctataaagtggaaagagtcagt
ggaaactccgtgctcaaaatttctttcacagagatcatgaagaaaaacgacattgtcatt
tgcacagcccagattctggaaaattacttggagaggtcggtcaaaggggaggacgaggga
gtgcatctaaaggatatcaccctgattataatagacgagtgccatcacactaacaagggt
gaagtctataaccgagtgatgatgcgttacctgaggcagaaggagaagaacaggatattg
aagaaggaccagaaggagacagttccgctacctcagatcctaggccttactgccacactg
ggggtaggcggtgccacgaaactgaagacagcagagaataacattttgcagttttgtgcc
aatttggatgcttctgaaatccagactgggaaccttgaggataacagcaatgagccagat
aaacaaattgttcttgttgcaaacaaagaacaggatccatttggtgacgtaatcaagaga
attatgcacaatattcaaattgatgccaatctgagccccacttgtgatcttggttctcaa
aactatgaacagtgggtagtacaatccgagcaacaagccgccaaagagggcgctcaggaa
ttgcgggtttgcctgaagcaccttcgatggtacaacaacgccctgatactcagcaacacc
attcgcatgtgtgatgccttcagtttcttgaataaacaccatgaggaagagttgaagagt
aaaacaagccccgacgatgagcacgtcataaacatcacagatactgagagagtcctcttc
aatttattccaagacaacaaagaggagcttcagaagctttccgagaaccaagccaatgaa
aattacagcttgtcaaaactacgacaaagtattctgtaccagttcactaccagggatgag
gccagaggtatcattttcaccaaaaccagactcagtgccatcgctctcagtcactggatt
caaaagaactccaagtttgccgacgtcggcataaacgtgtcgtatctcatcggaggtgga
gaccagagtgttgtcaaaccgatgaccgctgcagagcaaaaggatgttttgaacagattc
cgcaatggcgctgtcaacttgctggttgccacctcagttgcacaggaaggtttggacata
ccagcgtgcaactttgtcatctgctatggccttgtgaccaatgagatcgcgatgatacaa
gctcaaggcagagctcgagctgaggacagcagttacatcgtgattgaggtgaaaggctct
ggggtgactgagaaggagactgtcaatgagtaccgcaaggacctaatggccaaagccatt
gccagaatccaagccttagatcctgcagagtatatcaacaggattaaagaatttcaaagt
gaggctattgttaggagcaagttcagaaatagaaacaaaaacataaagccacaagatccg
tcagaggtgaagttaagttgccgacaatgcagcaagatcgtctgcacttgtgatgacatc
cagatcattggagacatgcaccatgtcaatgtttcatcagagtttagtgaacttttcatt
gagaaagaaaacaattctcaagagcgtcttcttgaatatgaacctcatgcctccatagca
tgcaaggactgtggacagaaatggggtacgatgatgatgtaccgaggaattccgtgcccc
cgcttgcaagtgaagaactttgttgtgacaatcaaggaaaagaagttcagcaaattcacc
aagtggcacgagcttcacatgaagttccagccattcgattacatcgagcacgccacccgc
ttggctcagtggtcagatgacgaagacgtctga
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