Syngnathoides biaculeatus (alligator pipefish): 133512710
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Entry
133512710 CDS
T09681
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sbia04040
]
133512710 (scn1laa)
Ion channels [BR:
sbia04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
133512710 (scn1laa)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
PFF1_TM
FUT8_N_cat
IQCJ-SCHIP1
Motif
Other DBs
NCBI-GeneID:
133512710
NCBI-ProteinID:
XP_061698593
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All DBs
Position
14:complement(12756558..12800827)
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AA seq
1853 aa
AA seq
DB search
MAQPLVPPGPDSFRHFSRESLAAIEKRIAEENAKKPKGEKRNRKDDDELKPSSDLEAGKS
IPLVYGEVPKGMVSTPVEDLDPYYSNQKTFIVINKGNFIFRFNAAPALYLLSPFNPVRRI
SIWILVHSLFSLVIMCTIITNCVFMTLSRPPDWAKNVEYTFTAIYTFESLVKILARGFCI
GKFTFLRDPWNWLDFSVIVMAYVTEFISLGSFSALRTFRVLRALKAISVIPGLKTIVGAL
FQSVKKLSDVMILTVFCLSVFALIGLQLFMGHLKQKCVFMPLHNNSAINGTFSNGTYMNG
TYNNSQIDAFNWTEYSLDNKNYYYIPGKRDPLLCGNGSEAGQCPEGFSCIKVGKNPDYGY
TSFDSFGWAFLSLFRLMTQDFWENLYQQTLRASGKPYMVFFVLVIFLGSFYLINLILAVV
AMAYEEQSQATIKEAQEKEEEFQAMLDQLKRQQEDAQAAAVASAEHDEVSNHAGVTESSS
ETSKLSSKSAKERCNRRRKRKEESRVPKSESQDSIKKARCRFSVEPNMLNYDMKCSAAHQ
ADTTDTDGGTNKECPDFPKDPEARVRTCSVASVITSTMEELEESRQKCPPCWYSFANTFL
IWQCCPAWLKIKKVVKLIVMDPFTDLTITICIVLNTLFMAMEHYPMTKDFSRTLTVGNMV
FTGIFTAEMVFKIIAMDPYYYFQEGWNIFDGIIVCLSLMELCLSSVVGMSVLRSFRLLRV
FKLAKSWPTLNTLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDCVCKISSD
CKLPRWHMSDFFHSFLIVFRVLCGEWIETMWDCMEVAGPTMCIIVYMMVMVIGNLVVLNL
FLALLLSSFSADNLAATEDDSDTNNLQIAIARIHKGIAFVKSLLQSMCNSVCLQNNSQNQ
GEDKSSIEDFHKASGPNGVPNHTIKELPRNGNGDVTGVDKTGDKYIVCSKTDDSIMSFIN
NPSLTVNVPIAMGESDFENLNTEDFSSVSSDAVECRVTVDDDAQLSTSEGSTVDFREKDG
DSLDLELEESMEPDACFPDSCVQRFQCCQVNVEVGWWKIWWTIRKTCFRIVEHNWFESFI
IFMILLSSGALAFEDVYIETRKNIKAMLEYADKMFTYIFILEMLLKWVAYGYAKYFTNAW
CWLDFLIVAVSLVSLTANALGFAELGAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAI
PSIFNVLLVCLIFWLIFSIMGVNLFAGKYYRCVNRTSDEPFLPSEVANMTECLALGKDAA
RWKNIKINFDNVGLGYLALLQVATFKGWMDIMYAAVDSPSKNQEQPAYEINLKMYLYFVV
FIIFGAFFTLNLFIGVIIDNFNQQKRKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPR
PSNKIQAYIFDITTKQAFDVVIMLLIWLNMVAMMVETDDQSDKKKEILSWINGVFICVFT
GECLLKMIALRQYFFTNGWNVFDFIVVVLSIIGMSLSELIEKYFVSPTLFRVIRLARIGR
VLRLIKSAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKESGIDDLF
NFETFGNSMICLFQITTSAGWDGLLAPILNKYEDDCDNTMEHPGSAVKGDCGSPSVGIAF
FVSYIIICFLIVINMYIAVILENFGVATEESADPLSEDDFEMFYEVWEKFDPRATQFMEY
DKLSEFADALDPPLRIAKPNRIELISMDLPMVSGERIHCLDILFAFTKRVLGEGGEMDIL
RAQMEERFMASNPSKMSYEPITTTLRRRQEDTSAVIIQRAFREHLRRRATDKTSLKAKDN
IPNDEKPVDKEDPLMDKLNEVSGSDIKEPSTYQPSENDNAELDVTGKDDTEHD
NT seq
5562 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagccgcttgtaccgccaggaccagacagcttccgccactttagtcgcgagtcc
ctcgccgcaatcgagaagcggattgcagaggagaatgccaaaaagccaaagggagagaag
agaaatcgcaaagatgacgatgaactcaagcccagtagcgatttggaagcaggaaagtcc
atccccctggtgtatggtgaggtccccaaaggaatggtctccacaccagtggaagacctg
gacccctactacagtaatcagaaaacgttcatagtaataaacaaaggaaatttcatcttc
cggttcaatgctgctcctgccttgtacctcctgagtcccttcaaccccgtgagaagaata
tctatttggattttggtccactcattgttcagcttggtgatcatgtgcactatcatcacc
aactgtgtatttatgacactgagtcgaccgcctgactgggccaagaatgttgaatacacc
tttactgcaatctacacatttgaatccctcgttaaaattttagccagaggtttctgcata
ggcaagttcacctttcttagagatccatggaactggctggacttctccgtcattgttatg
gcgtatgtaaccgagtttataagccttggcagtttctcagctcttcgtaccttcagagtg
ctgcgagctttaaaagctatttctgtgatcccaggcttgaagaccatcgtcggggcgctg
ttccagtcggtaaagaagctttctgatgtgatgatcctcactgtcttctgtttgagcgtc
tttgccctcatagggttgcaactctttatgggacatttaaaacaaaagtgtgtgttcatg
ccactccacaataactctgccatcaatggcacattttccaatgggacctacatgaatgga
acttacaacaacagccaaatagatgctttcaactggacagagtactcacttgacaataaa
aattactattatatcccaggcaaacgggatccattgctttgtggaaacggcagtgaggct
gggcagtgccctgaagggttttcatgcatcaaagtgggaaagaaccctgactatggttac
accagctttgactcatttggatgggccttcctttctctctttagacttatgactcaggat
ttttgggaaaacttgtaccagcagacactccgggcatcaggaaagccctacatggtgttc
tttgtgttggtcatattcctcggctctttctacctaatcaacctgattttggctgtggtg
gcgatggcgtatgaggagcagagccaggccacgataaaggaggctcaggagaaggaggag
gagtttcaggccatgctggaccaactcaaacgacagcaagaagatgcgcaggctgcagct
gtggcatcagcagagcacgatgaggtcagtaaccatgccggtgtcacggagagctcctca
gaaacctccaagctcagttcgaaaagtgccaaagagagatgcaacaggcgaagaaaaagg
aaagaggagagcagagtcccaaaatccgagtctcaggatagtattaagaaggcccgatgt
cgtttctctgtggagcccaacatgctcaactatgacatgaagtgctcggcagcccaccag
gctgacaccactgacactgatggaggaacaaacaaggaatgtcccgactttcccaaagac
ccagaggctagggtcagaacttgcagcgtagcaagtgtcataaccagcacaatggaagag
cttgaggaatcgcggcagaagtgtcctccctgctggtacagttttgcaaacactttccta
atttggcaatgttgtccagcctggcttaagatcaagaaagtggtcaaactaattgtgatg
gatccatttacggatttaaccatcactatttgcatcgtactcaacaccttattcatggcc
atggagcattacccaatgactaaagatttctccaggacgctaactgtgggcaacatggta
ttcactggcatcttcactgctgaaatggtcttcaaaatcattgctatggatccgtactat
tactttcaggagggatggaatatttttgatggaataattgtctgtttaagcttaatggag
ctgtgtttgtccagtgtggttggaatgtcagtcttgagatcattccgattgctgcgagta
ttcaagttggccaagtcttggcctacactcaacaccctgatcaaaataattggtaactct
gtgggggctttgggcaacctgacactggtgctggccattatcgtcttcatttttgctgta
gtgggcatgcagctgtttgggaaaagctacaaggactgtgtgtgtaaaatctccagcgac
tgcaaactgccccgctggcacatgagtgactttttccattcattcctcattgtgttccga
gtgctttgtggagaatggatagagaccatgtgggactgcatggaggtggctggaccaacc
atgtgcatcattgtctacatgatggtcatggttattggaaatcttgtggtgctgaacctg
ttcctggccttgctactgagttcattcagtgcagacaacttagctgccactgaggacgac
agcgacacaaacaatttgcagatcgccattgcacggatccacaaagggatcgcctttgtt
aaatccctgcttcagagcatgtgtaacagtgtctgtctacagaacaactcccaaaaccag
ggagaggataaatcatccattgaggatttccacaaagcttcaggacccaacggcgtccct
aaccataccattaaagagctaccaaggaacggaaatggagatgtgacgggagtggacaaa
actggggacaagtacattgtgtgcagcaagactgatgattccataatgtctttcatcaac
aaccccagtctgactgtcaatgttccgattgcaatgggggagtccgactttgaaaacctc
aacacggaggacttcagcagtgtctcatcagacgcagtggaatgccgggtgactgttgat
gacgatgcccagctcagcacttctgagggcagcacagtggacttcagggaaaaagatgga
gactctctagacttagaattagaggaatccatggaacctgacgcctgctttcctgacagc
tgtgtacagaggttccaatgttgccaagtaaatgtcgaggtgggctggtggaaaatatgg
tggactatcagaaagacctgtttcagaatagtggagcacaactggtttgagagcttcatc
atcttcatgatcctgcttagtagtggtgcattagcttttgaagatgtctacattgaaacc
cggaagaacatcaaagcaatgttggagtacgctgacaaaatgttcacctacatcttcatc
ttggagatgttactgaagtgggtggcctacggctatgccaaatatttcacaaatgcttgg
tgttggctggacttcctcattgttgctgtttcattggtcagtctgactgccaacgctttg
ggatttgctgaacttggggccatcaaatctctgagaaccctacgagctttgaggcccctg
agagccctttcgaggttcgagggcatgagggtggttgtaaatgctctgctgggggcgatt
ccttccatcttcaatgtactgttggtgtgcctcatcttctggctcatcttcagcatcatg
ggcgtgaacttattcgcgggaaagtactatcgctgtgtcaacagaacctcagatgaacct
ttcttgcccagtgaagtggcgaacatgacagaatgtttagccttagggaaggacgctgct
cgttggaagaatattaaaatcaacttcgacaatgttggtctgggttaccttgcgttgctg
caagtggctaccttcaagggctggatggacataatgtatgctgcagtggattcgccaagc
aagaatcaagaacagccagcatatgagatcaacctgaagatgtatctgtactttgttgtt
tttatcatatttggagccttcttcacactcaatctcttcattggtgtcataattgacaat
ttcaaccagcaaaagaggaagtttggaggtcaagacattttcatgactgaggaacagaag
aaatactacaatgccatgaaaaagctgggttcaaagaagccacaaaaaccaattcccaga
ccatcgaacaagattcaagcatacatatttgacatcaccacaaagcaagcatttgatgtt
gtgatcatgctacttatatggcttaacatggttgctatgatggtggaaactgatgaccag
tcagataaaaagaaagaaattctcagttggatcaacggggtcttcatttgcgtcttcacg
ggggagtgtttgttgaagatgattgcactccgccagtactttttcacaaatggttggaat
gtctttgatttcattgtcgtcgttctctcaattatcggtatgtctctctcggaactgatt
gagaaatactttgtgtcaccaactttgttcagagtcatccgactggctcgaatcggacgt
gtcctccgccttattaaaagtgccaaaggaatccgcaccctcttgtttgccttgatgatg
tcacttcctgccttgttcaacattggtctcttgctctttttggtgatgtttatctacgcc
atcttcggcatgtcaaactttgcttatgtgaaaaaggaatcaggaattgatgaccttttc
aattttgagacatttggcaacagcatgatctgcctgtttcagatcaccacctcagctggg
tgggacgggctattagctcccattctcaataaatatgaagacgactgcgacaataccatg
gagcatcctggcagcgctgtcaaaggggactgtggatctccttctgtcggcattgccttc
tttgtgagctacatcatcatctgctttcttattgtgataaatatgtacattgcagttatc
ctggaaaactttggtgtagccacagaggagagtgctgacccactaagtgaggatgatttt
gaaatgttttatgaggtttgggaaaagtttgatccacgtgcaacccagtttatggagtac
gacaagctgtctgagtttgcggatgccttggacccaccattacgcatagccaagccgaac
aggatcgaactaatctctatggatcttcccatggtgagcggcgaacgcattcactgcctg
gacatcctctttgcgtttactaaacgggttcttggtgagggtggagagatggacatacta
agggcgcaaatggaggagagattcatggcttccaatccttccaaaatgtcatacgaacct
atcacgaccacccttcgccggagacaggaggacacatcagccgtgatcatccagagagct
ttcagagagcatttgaggagacgggctactgacaaaacatccctaaaagccaaagacaac
attccaaatgacgaaaagccggttgacaaagaagatccgctcatggacaaactcaatgaa
gtttctggttcggatataaaggagccttcaacctatcaaccgtctgaaaatgacaatgct
gaactggatgtcacaggcaaagacgacactgagcatgattaa
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integrated database retrieval system
