Syngnathoides biaculeatus (alligator pipefish): 133512864
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Entry
133512864 CDS
T09681
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sbia03036
]
133512864 (dicer1)
Chromosome and associated proteins [BR:
sbia03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
133512864 (dicer1)
microRNA pathway
RISC loading complex
133512864 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Dicer_dimer
Ribonucleas_3_3
PAZ
Helicase_C
ResIII
DEAD
dsrm
Cas3-like_C_2
DSRM_2
Motif
Other DBs
NCBI-GeneID:
133512864
NCBI-ProteinID:
XP_061698844
LinkDB
All DBs
Position
15:1310007..1576765
Genome browser
AA seq
1872 aa
AA seq
DB search
MAGLKLVNPATSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALERNTIVCLNTDSGK
TFIAVLLTKELSHQIRGQYPGNAKRTVFLVNSALSVVQQAAAVRTHSDLKVGEFTDMEEL
SALTCHQWCEKIINHQVLVMTCHIFLHILRNQVLPLSKINLVIFDDCHLAIPDHAYCEIM
KLFDGSLCNPRILGLTASILNGKCDPSELEQKIQNLEEVLKSNAETATDLVVLDRYASQP
MEVVLDCGPYMDKNGLSSRLQVELEEALDFLNDCNIAVAREDRAPTIVSRQVLSDCIAVL
QVLGPWCADKAAGIMVRELQKYIKHEQGELNRKFLLFTDTILRKVHALCEEYFSPASLDL
NFVTPKVLRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEEEDEDDEVETQERP
EANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELSYISNNFITGHSIGKNQPR
NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYVMLADSDRTKSFENDLSTYKAIEKILRNKCSKSVEVGEFEREQVLDDDNI
LPPYVLQSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTMETQDGRFQSTLYLP
INSPLRVPVKGPKMNCARLAEKAVALLCCEKLHQIGELDDHLMPVGKETVKYEEELDLHD
EEETNVPGRPGSTKRRQCYPKTIPECLQDSYAIPEHTYYLYVIGMVLTTPLPDELNFRRR
KLYPPEDSTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFNLTTTELELIIRLH
QYIFSHILRLEKPALEFKPTLADSAYCVLPLNVVGISNTLDMDFKFMEDIEKSEARTGIP
TTHYTKQNPFTFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAE
YYKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQTASEAGVGSQILPPDFR
YPNLDFGWKKSIDRKIFMPFSEDYDLQQKHQSPDCISFTDESHPHHSQAIVNYRKNFANG
TTLIPDNGGIIFPNGEHTHLHSCQSSESLFLQLFCPEPMQMPTSVTVQPSQSLKTPSTCP
PPQTDECKPGRNMVHNNNATSTYRQAEECLSARKARSLAAVLHPNELAGDSIKSLGPNPG
LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN
LYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQEKTFTDKLDSDEAKEELLSNGCSGHD
RSSEPEEITDDGHLLLKNEPKDEVNMEDDLEYYKEHIKFIDNMLLGSGAFGKKISLSSFP
PTITTASGSSPCMETPYEWKVPKKNLLPSAHHHSEPLPTVSSAEDFDYSSWDAMCYLDPS
KAGEEDDFVVGFWNPSEETYGNDLGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCG
ERAAQMFLCSLGLKVLPLERGSLTGDFSYGWLKIPPRCMLEHPDAERTLNHLISGFENFE
KKINYTFQNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPG
VLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSELR
RSEEDEEKEEDIEVPKAMGDIFESLAGGIYMDSRMSLETVWQVYYPMMRPLIEKFSANVP
RSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALR
SLKANQPQVQNK
NT seq
5619 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcctgaagcttgtcaacccggcaacatctcccatggggcctttttttggtctt
ccatggcagcaggaggctatccacgataatatctatacacctagaaaatatcaggttgaa
cttcttgaagcagctcttgaacgtaatactatcgtctgcttaaatactgactcagggaag
acatttattgcagttctactaacaaaggagctttcccaccaaatccgtggacaataccca
ggaaatgcgaagaggactgtattccttgtcaactcagccttgtctgtggttcagcaagca
gctgcagttaggactcactctgacctcaaagtgggggagttcacagacatggaagagctt
tccgcattgacttgccatcagtggtgcgaaaagataatcaatcatcaggtgctggttatg
acttgccatatattcctgcacatactgaggaatcaagtcttacctttgtcaaaaatcaac
ttggtgatttttgatgattgtcatcttgccattcctgatcatgcctactgtgagataatg
aagctttttgatggcagcttgtgcaatcctcgcattttgggtctcacagcctccattctg
aatggaaagtgtgatccatcagaacttgagcagaaaatccagaatttggaggaagtcctg
aagagcaatgctgaaactgccactgaccttgtagttcttgacagatatgcctcacagcca
atggaagttgttctggactgtggcccctatatggataagaatgggctctcctctcgtcta
caagtggagttagaggaagcgctcgacttcttgaatgattgtaacatagctgttgcaaga
gaagacagagctcccacaatcgtttcccgtcaggtcctgagtgactgcatagctgtgctg
caggtcctggggccctggtgtgcagacaaagcagcaggtatcatggtgcgtgagctccag
aaatacatcaaacacgaacaaggagagctgaaccgcaaatttctgctgttcaccgacacc
attctcagaaaagtacatgctctttgtgaggaatatttctctcctgcctcgctggacctc
aattttgtcacaccaaaggttctccgcctgttggagatcctacatgaatacaagcccttt
gagcggcagcaatttgagagtgtagaatggtacaacaaccggaatcaggacaattatgtt
tcttggagtgattctgaagaagaagatgaagatgatgaggttgagacccaagaaaggcct
gaagccaactttccttcaccattcaccaacattctatgtggaattatctttgtggagagg
cgttacactgcggtcgtcctcaatcgtctcatcaaagaggcaggaaagcaggaccctgag
ctgtcttacatcagcaataacttcattactggccatagcattgggaagaatcagccacgg
aacaagcagatggaggtggaattcaggaagcaagaggaggttctccggaaattccgggct
catgaaaccaacctgctgattgccacaagtattgtggaagaaggtgtggacattccaaag
tgtaacttggtggttcggtttgacttgccaactgaatacaggtcctatgtccagtccaaa
ggccgagctcgagctcctgtttccaactacgtgatgctcgctgatagtgataggaccaaa
agctttgaaaatgatctcagtacttacaaggccatagaaaagatattgagaaacaagtgt
tccaaatccgtggaggttggtgagtttgaacgagagcaagttttggatgatgacaacatc
cttcctccatatgttcttcaatctgaggatggaggtccccgggtcaccataaatacggcc
attggacacattaacaggtattgtgctcggctgcccagtgaccccttcacccacttggct
cccaagtgtaaaacaatggagacgcaggatggaagattccagtcaacactttatttaccc
ataaactccccgctgagagttcctgtcaagggtccaaaaatgaattgtgccagattggca
gagaaagcagtcgcactactttgttgtgagaaactccatcaaataggtgagctggatgat
catttgatgccagttgggaaagagacggtaaagtatgaggaagaactcgaccttcatgat
gaagaagagaccaacgttcctggccggcctggctcgacaaagaggaggcagtgctatcca
aaaactattccagagtgtctccaggacagttatgctataccagagcatacctactaccta
tatgtcatagggatggtcctcaccacgcccctaccggatgagctcaactttcgccgacgg
aagctttacccaccagaagacagcactcggtgttttggcatcctgacagccaaacccata
ccgcgcatcccccattttccagtctacacacggtcgggtgaagtgaccatctctattgag
ttacaaaagtctggcttcaacctcaccaccactgagcttgagctcatcattcgcctgcac
cagtacatcttctcacatatcctgcgcttagaaaaacctgcattggaattcaagcctact
cttgctgattctgcttattgtgttctacctctcaatgttgttggcatttccaacacacta
gatatggacttcaagttcatggaggatattgaaaagtctgaggctcgaactggcattcca
actacacattacaccaaacagaaccccttcaccttcaaactggaggattatcaggatgcc
gtcatcattccaaggtaccgtaactttgaccagcctcatcgcttttatgtagctgatgtg
tacacagatctcacacctcttagcaagtttccttcaccagaatatgaaacgttcgctgag
tactacaaaactaagtacaacctggacctttccaacctgaaccagccactcttagatgtt
gaccatacctcatccagactgaatctcttaacaccccgccacctgaaccaaaagggcaaa
gcactgcccctcagcagtgcagagaaaaggaaagcaaaatgggaaagtctacagaacaaa
cagatcctggttccagagctttgtgccatccaccccatccctgcatccctttggaggaag
gctgtgtgtttgcccagtatcctgtaccgtctccactgtctcttgacagcggaggaactc
agatcccagacagccagtgaagctggagttggatcacaaatccttcctcctgattttagg
tatccaaacttggactttgggtggaagaaatcaattgaccgtaaaatattcatgcccttc
agtgaggattatgaccttcaacaaaagcaccagtcacctgattgcatttcattcacggat
gaaagtcaccctcaccattcccaagccattgtcaattacagaaagaactttgcaaatggc
actactctaattcctgacaatggtggcattatatttccaaatggagagcacactcaccta
catagctgtcaatcctccgagtctctatttcttcaactgttttgccctgaaccaatgcaa
atgcctacctcagttactgtgcagccctctcaaagcttaaagactccaagcacgtgtcct
ccaccacaaactgacgaatgtaaaccaggaaggaacatggttcacaacaataatgctacc
tcaacctacagacaggccgaagagtgtctcagtgctcgcaaagcacgcagtcttgctgct
gtcctgcatcccaatgaactggcaggagactcgataaaaagtctgggcccaaacccaggc
cttatcctgcaggccttgaccctctcaaatgccagcgatggcttcaacctagagcgattg
gaaatgttgggagattcattccttaagcatgccatcaccacatatctgttttgcacctac
cctgatgcccatgagggaagactcagctacatgcgcagcaagaaggtgagcaactgtaac
ctgtatcgtttggggaagaagaaaggacttcccagcaggatggtcgtgtccatctttgat
ccccccgtcaactggctgcctcctggttatgttgttaatcaggagaagacctttactgac
aaactggattctgatgaggccaaagaagagcttctatctaatggatgttctggtcatgac
cgtagtagcgagcctgaagagatcaccgatgatggacacctgcttttgaagaatgaacca
aaagatgaggtcaacatggaggatgacctggagtactacaaggaacacatcaaattcatc
gacaatatgctcctaggatctggtgcatttggtaaaaagatctctctcagcagcttccca
cccactataaccactgcttcaggctcatcaccatgcatggagaccccttatgaatggaag
gtcccaaagaaaaatctattaccctcagcccaccaccactcagagccactacccacagtt
tcttcagctgaggactttgattacagttcatgggatgcaatgtgctaccttgaccccagc
aaggctggtgaagaggatgactttgtggtgggtttttggaatccatcagaagagacctac
gggaatgaccttggaaagcagtcaatctcctacgatttgcacacagagcagtgcattgca
gataagagcattgcagactgtgttgaggctctgcttggttgctatctgaccagctgtgga
gagagagctgcccaaatgttcctttgctcattgggtttgaaggtgctaccacttgagagg
gggagcttgactggtgacttttcctatggttggttgaaaatcccaccacgctgtatgctt
gaacatccagatgcagaacgaaccctcaaccatcttatctccggctttgagaattttgaa
aaaaagatcaactacacatttcagaacaaggcctacctactgcaagccttcacccatgcc
tcctatcactacaacaccattacagattgttaccaacggttggagttccttggtgatgct
attttggactacctcataacaaagcacctttatgaagacccacggcagcactcgcctggt
gtactgactgatctccgctcagcacttgtcaacaacacgatttttgcctctttggccgta
aagtatgactaccacaagtacttcaaagctatctcacctgaacttttccacgttattgat
gactttgtgcagtttcaattggaaaagaatgagatgcaaggcatggactctgagttacga
cgctctgaagaagatgaggagaaagaagaagacattgaagtccccaaggctatgggcgat
atctttgagtcacttgctggaggcatttacatggacagcaggatgtcattggagactgtg
tggcaagtgtattatccaatgatgaggccacttattgagaaattctctgcaaatgtgccc
cggtctcctgtgagggagttgcttgaaatggaaccagaaactgccaagttcagtcctgca
gagagaacttatgatgggaaggtccgggttactgtggaagtcgttggaaaaggcaagttc
aaaggagttggacgcagctaccgtattgccaagtcagcagcagcccgacgagctctgcgc
agcctcaaagccaatcaacctcaggtccaaaacaagtga
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integrated database retrieval system
