Syngnathoides biaculeatus (alligator pipefish): 133512882
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Entry
133512882 CDS
T09681
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbia03021
]
133512882 (scaf8)
03041 Spliceosome [BR:
sbia03041
]
133512882 (scaf8)
Transcription machinery [BR:
sbia03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133512882 (scaf8)
Spliceosome [BR:
sbia03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
133512882 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
133512882
NCBI-ProteinID:
XP_061698913
LinkDB
All DBs
Position
15:10830966..10877283
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AA seq
1339 aa
AA seq
DB search
MEAVKAFNNELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIIITFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGILPPSVTPVMSSSAAPVNNTTPGTPATPATPANIVQGLPDWAS
QITNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANTLNPLEQRVSSFNKKLLGQFDFGNESERGEESKKETSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLLEHQQKALSIEGQETLFGQENSVATAQGSNQPQVPEPETKM
DDSIDNQQQDMDLDEGPDGMEEDNFETEDNKTITTRSRTRSRSRSRSPKRRRSRSRSGSR
KRKHRKRSRSRSRDRKRKTSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQ
VDKKASQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSCKIGSKI
IKIAWALNKGVRQEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGGIIDQETVNDEWDTAK
TSEATKDAISQPLSTETTPASNSQSESYNQQVTMMPVQLPVAPTVPGAVGLVPPNFPVSM
SIPPPGYGPPPPFLRPTFNASQPPPGFMQAAQTAAMATPPVSLVQPPVATSQETVKESPF
SSMIPTTCSMPGGFMSSAVPGPNVFNAVGVQSQHSSDKRPPPAKGLEGTQELTIQGRSGI
GLLGMQPTASLAHPLHQAGMAGQRMPGMMPLDVRPNLLQPGAGARFPLLLQQGPGQQPGG
HLDGSLQAQAHVRPPFPQLDPFHRPPHQANDNVAKTEESSSGADEGKDQDYRFPPVDKPS
TGLLRTPPPEHRTPLSGAGAGGRPPLLQTPGTQPARGNLLGRLQALAGFTPDNHWNQSRG
DFDERDGMDRPNQGQHFPNRFDSRPGNTASKNVGGPQPWNRGGGAPFESDLDERRSQWDR
QRDRDERDFDFRREMNGNRQGRERDRDRERGRDRPREHDKDREKERERERGNWTPVLPLP
TPLLPTPPLNPGLNLNQGKLLTPLKLNTPIQSRFHSPLLSQAQAKASKFGQHPPPAPVQL
AEPKISSQTAEVEPQKNIASLPETPQSQSPPSAQFDNKAQNRLPSSPAEAPSSLQPETTL
LSESLHQASDQPFPQTTRSSDTPSQASPVGLTQAASSPEEIKYSLEEHISPQEKTEEVLQ
EKPPSPKAQWLNGAEMDKSTVFKPTPDASPEPTKSALPESEPKQEQAPPPPDVDIVQSEA
VEEAASEPVLDTDTHTEGT
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaaagccttcaacaacgagttgtactcgttgaatgagtacaagccaccc
atctcgaaggccaagatgacccaaatcaccaagtcaggcatcaaggccattaaattctac
aagcatgttgtccagagtgtggagaagttcatacaaaagtgcaaaccagaatacaaggtc
cctgggttgtatgttatcgactcaattgtgaggcagtcacgtcaccagtttggcacagag
aaagatgtgtttgccccacgtttcagcaagaatataatcataacattccagcatctttac
cgttgcccctctgatgacaagagtaagatagtgagggtcctgaacctttggcaaaaaaat
gctgtcttcaagagtgacatcatccagcctttgttggacatggctgcggggattcttcct
ccgagcgtcactcccgtcatgtccagcagtgctgcccctgtcaataacaccacacctggc
actccagccaccccagctaccccagccaatattgttcagggactaccagactgggcttcc
cagataaccaacacagacactgtggcagctgtggcgcaaatcttacaaagtcctcagggg
caacagcttcaacagcttgtacaaagcctgcaaatgcagcaacaaaagcctcagccctca
ctgcttcaggccttggatgctggtctggttgtacaactgcaggctctgaccgctcaactc
actgcagctgcgactgctaacaccctcaaccccctagaacagagggtctcctcttttaac
aagaaactcttagggcagtttgactttgggaatgagtctgagcgtggtgaagaatccaag
aaggaaacatcatcctctcaactgcctatggtgtcagagcccatcaacagctcactgttc
caccaacttgcagagcagctgcagcagcagaatctggaacagtttcagaagcaactgctg
gagcaccagcaaaaggctttgagcatagaaggacaggagaccctatttggacaggagaac
tctgttgcaactgctcagggtagcaatcagccgcaggttcctgagccagagaccaaaatg
gatgactccatagacaaccagcaacaggacatggatcttgatgaaggcccggatggaatg
gaagaggataactttgagacagaggacaataagacaattaccacccgctccagaacacgg
tcaaggtcacgttctcggtctcccaaaaggcgaaggtctcggtccagatcagggtcacgg
aagcgcaagcatcgtaagcggtcgcgctcacgttccagagatcgtaagagaaagacatcg
cgatcgtactcaagtgaaagacgtgcccgagagcgagaaaaagaacgacagaagaaagga
ctgcctcctatacgatctaaaactcttagtgtgtgcagcacaaccctttgggttggccag
gtggacaaaaaggcctctcagcaagacctcacaaacctgtttgaagagtttggacaaata
gaatctataaatatgatccctccaagaggctgtgcctacatctgtatggttcacagacag
gacgcataccgagcacgccagaagctcagcacaggttcctgcaagattggctccaagata
atcaagattgcttgggccttaaacaaaggagtaagacaagaatacaagcagttttgggac
gtggacctcggagtcacctacataccatgggaaaaagttaaagtggatgacttggatggt
tttgctgaaggaggaatcatcgatcaagagactgtcaatgatgagtgggacacagctaag
acttcagaggcaaccaaggatgctataagccaaccacttagcactgagacaacaccagca
tcaaacagtcaaagtgaaagctacaaccagcaggtcactatgatgcctgtgcagctacca
gtggccccaactgttcctggcgcagtaggcttggtgccccctaactttcctgtcagtatg
agcattcccccgccaggttatgggccaccaccaccattcttaagacccaccttcaacgcc
tcacaaccacctccaggttttatgcaggcagcacagactgcagccatggccacaccacca
gtttctctagtgcaacccccggtggcaaccagccaggaaacagtgaaggaatcacctttc
agttcaatgatcccaacaacctgctcaatgcctggtggcttcatgtcctccgctgtccct
ggacccaatgtgtttaatgcggttggagttcaaagtcagcactcgagtgacaaaaggccg
ccacccgctaagggtttggaagggacacaggagctcacgattcaaggtcggagtggaatt
ggcctccttggcatgcagcccacagcctccctcgcccacccacttcaccaggctggaatg
gcgggacaaagaatgcctggaatgatgccgttggatgtccgtcctaacctccttcagcct
ggggctggtgctcgcttccccctccttctgcagcagggacccggccagcagcctggtggc
catcttgacggctcccttcaggctcaagcccatgtcaggccccccttccctcaactagat
ccctttcaccggccccctcatcaggctaatgataatgtagccaagacagaagagtcctcc
tcaggggcagatgagggtaaagaccaggactaccgcttccccccagtagacaagccgagt
acaggtctgctgagaacaccaccaccggagcatcggacgccccttagtggtgctggggca
ggaggcaggcccccattgctacaaacaccaggaactcagccagctagaggcaatctgctt
ggacgtctgcaggctctcgccggctttacccctgataatcactggaaccagtcaaggggg
gactttgatgaacgtgatggaatggatcgccctaaccaagggcagcacttccctaaccgc
tttgacagccgtcccggaaacacagcttccaagaatgttggtgggccgcagccatggaac
cgtggtggtggagccccttttgaaagtgacctagatgaacgaagatcccagtgggacagg
caaagggatagagatgaaagagattttgactttaggagagaaatgaatggaaaccgtcaa
ggccgtgagcgggatagagacagggagagagggcgagaccgtccccgagaacacgacaaa
gatcgcgaaaaagaacgagagcgggaacgtggcaactggactcctgtcctccctctacca
acaccacttcttcctacaccacctctcaaccctggtctgaacctgaatcaagggaagctg
ctcaccccactcaaattaaacacccccattcagtcacgattccactctcccctgctgtct
caagctcaggccaaggcgtctaagtttggtcaacatcccccaccggctcctgttcagtta
gcagagcccaaaatatccagccaaacagcagaggtggaaccacagaagaacattgcttct
ttgcccgagacccctcaatcccaatccccaccttcagctcaatttgacaacaaggcacag
aaccgattgcccagttcacccgctgaggcaccatcatcactgcagccagagaccactcta
ctatctgaatcactacaccaagcctcagaccagccctttccccagacgaccaggtcctca
gacactccgagccaggcatctcctgtgggcctcacacaagcagccagctcccctgaagag
ataaagtactctctggaggagcacataagcccacaggagaagactgaggaggtcttacaa
gagaaacccccttctcccaaggcccagtggctcaatggggctgagatggacaaaagcacg
gtgttcaagcccacaccggacgcatctcctgagcccaccaagtctgcgcttcctgaaagc
gaacccaagcaggagcaggctccgccccctccggacgtagacattgtacagagtgaggcc
gtggaggaagctgcaagtgagccagtgctagacactgacacacacactgaggggacataa
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