Syngnathoides biaculeatus (alligator pipefish): 133513443
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Entry
133513443 CDS
T09681
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3 isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133513443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbia03021
]
133513443
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133513443
Transcription machinery [BR:
sbia03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133513443
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
133513443
U7-dependent histone pre-mRNA processing factors
133513443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
133513443
NCBI-ProteinID:
XP_061700238
LinkDB
All DBs
Position
15:complement(15193260..15205905)
Genome browser
AA seq
724 aa
AA seq
DB search
MASKRKIELAVPAEESDQLHIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTTFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILIIVHASNLKISYIFFFVIPSSVFHRFVQESTY
GTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIP
IYYASSLAKKCMAVYQTYVNAMNDKIRKAININNPFVFKHISNLKSMDHFDDIGPSVVMA
SPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMS
VDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMGRLKAALIREYEDNDKVHIEVHN
PRNTESVTLNFRGEKLAKVMGSLADQKCIQGQRVSGILVKKNFNYHILNPSDLSLYTELS
MSTVKQTQAIPFTGPYSLLVCHLRNLTGDVEELDGTEKKTLRIFQSITLIHEIGMVVLEW
LANPLNDMYADAVTTVVLEVQSNPKAQKVMETQSSILDMDVFQSRLEVMLQDMFGQDYVD
IHDGQNISVTVDGKTVNVCLETRSVSYEDESTEDDSLRELVEQAVLRLFDALNPITSLAP
SVTF
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaaacgcaaaatagagttggctgtcccggctgaggagagtgaccagcttcat
attcgcccgctgggtgctgggcaggaggttgggaggtcttgtattatactggagttcaaa
ggaagaaagattatgctggactgtggcattcaccccggcttagagggaatggatgcgctc
ccctacatagacttgatcgacccggctgagattgacctgctgctcatcagccatttccac
cttgatcactgtggggctctgccttggttcctccagaagaccaccttcaaaggcagaacc
ttcatgacccatgccaccaaggccatataccgctggctcctgtcagactacgtcaaagtc
agcaacatatctgcagacgacatgctatacaccgaaacggacctggaggagagcatggat
aagattgagacaattaacttccatgaggtcaaggaagtggcagggatcaagttctggtgc
taccatgccggccacgtactgggggctgccatgtttatgattgaaatagccggggtcaag
ctgctgtacacaggagacttctcacgccaggaagacaggcacctcatggccgctgagatt
cccagcgtcaaaccggacatcttaatcattgtacatgcatcaaatttgaagatttcatac
atttttttttttgtcattccatcaagtgtgtttcatcgttttgtgcaggaatctacatac
ggcacgcacatccatgagaagcgagaggagcgcgaggctcgcttctgtaacacggtccac
gacatcgttaacagagagggccgctgtttgattcccgttttcgctttggggcgagcccag
gaactgctgctcatactggacgagtactggcagaaccacccggagctccacgacatcccc
atctactacgcctcgtccttggccaagaagtgcatggccgtgtaccagacgtacgtcaac
gccatgaacgacaagatccgcaaggccatcaacattaacaacccctttgtcttcaaacac
atcagcaacctcaagagcatggaccactttgacgacatcggcccaagtgtggtgatggcg
tcccctggcatgatgcagagcggcctctccagggagctctttgaaagctggtgcacggac
aagaggaacggcgtcatcatcgccgggtactgcgtcgaggggacactcgccaagcacatc
atgtccgagcccgaggagatcaccaccatgtcgggacagaagctgcagttgaaaatgtcg
gtggactacatctccttctcggcccacaccgactaccagcagaccagcgagttcatccgt
gctctcaaacctccgcacgtgatcttggtccacggcgagcagaacgagatgggacgtctg
aaggcggcgctgatcagagagtacgaggacaatgacaaggttcacatcgaagtccacaac
cctcgcaacacggagtcggtcaccctcaacttcagaggagagaagctggccaaggtgatg
ggctccctcgcggatcagaagtgcattcagggtcagagggtctcaggtatcctggtgaag
aagaacttcaactaccacatcctcaacccctcggacctttcactgtatacagaactatcc
atgagcacagtgaagcagacccaagccatcccgttcactggaccctattcgctgcttgtc
tgccaccttagaaacctcacaggtgatgtggaggagctggacgggactgaaaagaaaacc
ctgaggatcttccaaagcatcactctgatccacgaaatcggcatggttgtgctggagtgg
ctcgctaaccctctcaacgacatgtacgccgacgccgtcaccactgtggtgctggaggtc
cagtccaatccaaaggctcagaaagtcatggagacccagagttccattttggacatggac
gtctttcaaagcagactagaagtcatgttacaggacatgtttggccaggactacgtggac
attcatgacggccaaaacatctcagtgaccgtcgatggcaagacagtgaacgtttgcttg
gaaacacggtcggtgagctacgaggacgagagcacagaggacgattccctgagggagctg
gtggagcaggctgtgctgcgcctctttgacgccctcaaccccatcacatcactcgcgcca
tcggttaccttttaa
DBGET
integrated database retrieval system
