KEGG   Syngnathoides biaculeatus (alligator pipefish): 133513564
Entry
133513564         CDS       T09681                                 
Symbol
hltf
Name
(RefSeq) helicase-like transcription factor isoform X1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
sbia  Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:sbia00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sbia04121]
    133513564 (hltf)
   03400 DNA repair and recombination proteins [BR:sbia03400]
    133513564 (hltf)
Enzymes [BR:sbia01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     133513564 (hltf)
Ubiquitin system [BR:sbia04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    133513564 (hltf)
DNA repair and recombination proteins [BR:sbia03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    133513564 (hltf)
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_3 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-RING_5 DEAD RING_XB3-XBAT31 zf-C3HC4_4 zf-ANAPC11 ResIII Prok-RING_4 zf-Nse zf-RING_6 DUF5817 zf-rbx1 zf-RING_4
Other DBs
NCBI-GeneID: 133513564
NCBI-ProteinID: XP_061700434
LinkDB
Position
15:complement(22781443..22810824)
AA seq 1002 aa
MSYKSGRRGLRTRGGLTDALRSNGIGNESDRRSRQRGGMAFRRSWFSWDRQRRELDLFTT
DSLAQTNSLSQAIRAAASEEPDDVVRLGHMQGTVVGLRYYSGVVNQGEMVSLVREPQNVF
DRNAIMVANVNGSQVGHIKRELAAAMAHVMDNDLAVVEGVVHSGTKNKFSMPVILSFWAP
VGNKDAVIKCLACHGYKLNTDQSLYGSGGTASNTRGTTIPLTAEELRNAFDNLFEGLLES
KDGEKEAAESVATPLLPHQRQALSWMCARENKCLLPPFWEKRGDHYYNTLTCFSAKELPE
RVLGGILADDMGLGKTLTTIALILTNFHQGKPLPVYRREHSSSLKANRAGPSGGPAHGLR
SGSAQLVQSCVPTATIKDTEKLPEKGKRTTKTTKRKNETPLLLEDADFASALCRGPASPP
NLFKKKKKKRATGSTLTADYYTAKSPHEALSAGATLIVCPLSVLSNWLDQFEEHVRADVK
LNVYMYHGPDRNKSTKFLTSQDVVLTTYNVLASDFTSNIRSPLHEINWLRVVLDEGHVVR
NPNTQMSKAVLDLRAERRWILSAVLCQVFFDLLDRPLQSGLVHRGAGTPIQNSVKDLWML
LAFLRLKPFDEREWWHRVIQRPVMQGDRAGLQNLQTLIKCITLRRTKSSEVDGLPLVTLP
EKSVCVEQVELSAAEREEYELAREEGRHTIGRYVAEGTVLRNYADVLSILMRLRQYCCHP
DLLASNTGDAGLATTPAELRERLVEKLRVVLASGSDEECSVCLDSVRLPVITHCAHVYCR
PCIARVIGNEQESARCPLCRSDIKISELVEFPQEEIGQEHEVRSPGKLRSSSKIQALIGN
LLRLRREDGGAKCLVVSQFTRFLTILETPLREHGFSFVRLDGTMSQKKRTQVIQEFQSMA
PSSPTIMLLSLRAGGVGLNFTAASHVFLMDPAWNPATEEQCIDRCHRLGQKRKVFVTKFI
VKDSVEENMVKIQKRKQALTDMAFGSDRKMSRINDIKALMEL
NT seq 3009 nt   +upstreamnt  +downstreamnt
atgtcgtacaaatctggacgccgcggcctccgtacgagaggcggtttaaccgatgcgttg
cgttcaaatggcatcgggaatgaaagtgatcgtcgttcgcgacaaaggggtggaatggct
tttcgtaggagctggttcagttgggacaggcagaggagggagttggacctctttaccacc
gacagcctggcccagaccaacagtctctcccaggccatccgggccgccgcctccgaggag
ccggacgacgttgtgcgtctcggccacatgcagggcaccgtagtgggcctcagatattac
agcggggtggtgaaccaaggcgaaatggtcagtctcgtccgagagcctcagaacgtgttt
gatcgcaacgccatcatggtggccaacgtcaacggcagccaggtcggccacatcaagagg
gagctggcggcggccatggcgcacgtcatggacaacgacctggctgtagtagaaggggtg
gtgcactccgggacaaagaacaaattctccatgcctgtgattttgtccttttgggcgccc
gtcgggaacaaggacgcggtcattaagtgtttggcatgccacgggtacaaactcaacaca
gatcagagtctgtacggctctggtgggacggcatcaaatacaagaggaacgaccattccc
ctcacggcagaggagttgaggaatgccttcgacaacctcttcgaaggcctgctggagagt
aaggatggggaaaaggaagcagctgagtccgtggccacccccctgctgccacaccagcgg
caggcgctgtcgtggatgtgcgcgcgtgaaaacaagtgtctgctgccgcccttctgggag
aagcgcggcgatcactactacaacaccctgacgtgtttctcggccaaagaactacctgag
agggtcctcggcgggatactggcggacgacatgggactggggaaaacgctgacgaccatt
gcgctcatcctcaccaacttccaccaggggaagcccttacccgtgtacagacgcgaacac
tcttcgtctctaaaagccaacagagccggaccgagcggcggcccagctcacggtttgcgc
tcaggctcggcccaattggtgcaatcgtgtgttcccacagcaaccataaaggacacagaa
aagctgccagagaaaggcaaaaggacaacaaaaaccaccaagcgaaaaaacgagacgccg
ctgttgctggaggatgcggactttgcctcggctctgtgcagaggcccggcgtcgccgcca
aatttgttcaagaaaaagaaaaagaagagggcgaccggctccaccctgactgccgattac
tacaccgcaaagagcccacacgaggctttatcggcaggggcgactctcattgtgtgcccg
ctgtcggttctcagcaattggctggaccagtttgaggagcatgtgcgagctgacgtcaag
ctcaacgtgtacatgtaccacgggcccgaccgtaacaaaagcaccaagttcctcacatct
caagacgtggtgctcaccacctacaacgtgctggcttctgactttacaagtaacataagg
agtcctctgcacgagatcaactggttgagggtggtgctggacgagggccacgtggtgcgg
aaccccaacacgcagatgagcaaggccgtgctggacctcagagcagagcgacgctggatt
ctgtcggctgttctttgccaagtattctttgacttgctagacagaccactgcagtcagga
ttagtccaccgtggcgcaggcacgcccatccagaacagcgtgaaggacttgtggatgctt
ctggccttcttgcgtctaaagccgttcgacgagagggagtggtggcatcgagtcatccag
aggcccgtgatgcaaggagacagagctggcctgcagaacctccagactttgatcaagtgc
atcacgctgcggcgcaccaagagcagcgaggtcgacggtctcccgttggtcacgctgccc
gagaagagcgtctgcgtggagcaggtggagctcagcgccgccgagcgcgaggagtacgag
ctggcgcgcgaagagggaagacacaccatcgggagatatgtcgccgaaggcacagttttg
aggaattacgcagacgtcctgtccatcctgatgagactgcggcagtactgctgccaccct
gacctgctggcgagcaacaccggagatgcaggcttggccacgacgccggccgagctgcgc
gagcgcctcgtggagaagctgcgcgtggttctggccagcggctcggacgaggagtgctcc
gtgtgtctggactcggtacggctgcccgtcatcacgcactgcgcccacgtctactgccgt
ccctgcatcgcacgggtcatcggcaacgagcaggagagtgcccggtgccctctctgtcgg
agcgacatcaagatcagcgagctggtggagttcccgcaagaggagattggccaagagcac
gaagtaagaagtcccggcaagttgaggagcagctccaagatccaagcgctgatcggcaac
ctgctacgtctgcggcgcgaagacggcggcgccaagtgtctggtggtctcgcagttcact
cgcttcctcaccatcctcgagacgccgctcagggagcacggcttcagcttcgtgcgactg
gacggcaccatgagccaaaagaagcgaacccaggtcatccaagagttccagagcatggcc
cccagcagccccaccatcatgctgctgtcgctcagagccggcggcgttgggctcaacttc
accgccgcttcccacgtcttcctcatggaccctgcttggaacccagccacagaggagcag
tgcatcgaccgctgccaccgtctcggtcaaaagaggaaagtctttgtcaccaagttcatc
gtgaaggactctgtggaggagaacatggtgaagatccaaaagcggaagcaggcgctaacg
gacatggcgttcggcagcgaccgcaagatgtcgcgcatcaacgacatcaaggcgctcatg
gagttgtag

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