Syngnathoides biaculeatus (alligator pipefish): 133514173
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Entry
133514173 CDS
T09681
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133514173 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133514173 (xab2)
03041 Spliceosome [BR:
sbia03041
]
133514173 (xab2)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133514173 (xab2)
Spliceosome [BR:
sbia03041
]
Complex B
Other components
Prp19-related factors
133514173 (xab2)
Complex C
133514173 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
Suf
TPR_2
TPR_8
TPR_16
TPR_15
ARM_TT21_C
ARM_TT21
NRDE-2
TPR_1
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
133514173
NCBI-ProteinID:
XP_061701595
LinkDB
All DBs
Position
16:complement(21121622..21129405)
Genome browser
AA seq
850 aa
AA seq
DB search
MVEIPPLNGKQDVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNAAKPVLNLIYERALK
ELPGSYKLWYNYLRERRKQVKGKCINEPVYEEINNCHERALVFMHKMPRIWIDYCQFLVL
QCKITRSRRSFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAED
YIEYLKSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGA
IIRGGLTRFTDQLGKLWCSLADYYIRSGLFEKARDVYEEAILTVVTVRDFTQVFDSYAQF
EESMIAAKMETTSEMGQDEEDDIDLELRLARFEELIARRPLLLNSVLLRQNPHNVHEWHK
RVKLYEGVPRQIINTYTEAVQTVDPMKATGKPQTLWVTFAKFYEDNEQLDDARTIFERAT
KVNYKQVDDLATVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYK
SLKVWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIVINYAMFLEEHNFFEESFKAYE
RGIALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQAVDGCPAKFAKTIYLLYAKL
EEEYGLARHAMAVYERATEAVENEERHQMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDE
HSRDMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTAVFWQTWKEFEIRHGNEDTIRE
MLRIKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQLGIDDMKMLEQKAQELAAE
AAQDKPKPKEKILFIRSDTSRSELAELAKQANPDEIDIDDEDEDDGQGPEEVQLEQKSVP
TAVYGGLKDD
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atggtagaaataccgcccctaaatggaaaacaggatgttatatttgaggacgatgatctt
ccgtatgaagaggaaattatcagaaatccgtattcagtcaagtgttggatgcgttacatc
gagtttaaacagaatgcggccaagcccgtcctcaatttgatctatgaacgggctctgaaa
gagctacctggaagttataaactatggtacaattacctgagagagaggaggaaacaagtc
aaagggaaatgtataaatgaaccagtttatgaggaaatcaacaactgccatgaaagagca
ctcgtgtttatgcataagatgccaaggatatggatcgattactgccagttcctggtgttg
cagtgtaagatcacgaggagtcggcgatcatttgaccgtgcgctgcgagcccttcccgtt
actcaacatccacgcatctggcctctctatcttcgctttgtccggaacctgcctctgcct
gagacggccatacgggtctaccgcagataccttaagctttctccagagaatgcagaggat
tacattgagtacttaaagtctgttggccgactggatgaagctgccgtgcgtcttgcggct
gttgtcaatgatgaaagctttgtctccaaggaaggcaaatctaactatcagttgtggcac
gagttgtgcgacctgatttcacagaaccccgacaaggtgacttccctaaatgttggcgcc
atcatccggggtgggctcactcgctttacagaccagcttggcaagctttggtgttccttg
gctgattattacatcaggagcggcctctttgaaaaggcccgggatgtgtacgaggaggcc
attctcaccgtggttactgtcagggatttcacacaagtctttgacagttacgctcagttt
gaggagagcatgatcgcagccaagatggagacgacctccgagatgggccaggacgaagaa
gatgacattgatctcgagcttcgacttgcacgctttgaggagctgatagcgcgacgacct
cttcttctgaacagtgtactgctacgccagaacccccacaatgtccacgagtggcacaaa
cgtgtgaaactgtacgagggtgttccacgacagatcatcaacacatacacagaggcagtg
cagaccgttgatcccatgaaagccaccgggaagcctcagacgctttgggtcacatttgca
aaattctatgaggataatgagcagctggatgatgcccggaccatctttgagagggccacc
aaagtcaactacaagcaggtggacgacctggccacagtgtggtgcgaatatggggagatg
gaactccggcacgagaactacgaacaggcgctcagaatattgaggaaagcaacggccatt
ccatccaagaaggctgagtacttcgatgcctctgagccggtccaaaaccgggtctacaag
tctttgaaggtctggtccatgttggcagacttggaagagagtcttggcacattccagtcg
acgaaagcagtgtacgaccgtattattgacctgcgcatcgccactccgcagatcgtcatc
aattatgccatgttccttgaagagcacaacttctttgaggagagcttcaaagcgtatgag
cgtggcatcgccctcttcaagtggccaaacgtttacgacatctggaacacttacctcacc
aagttcattgaccgatacggaggcaagaagctggagagagccagagatctattcgagcaa
gccgtcgacggctgccctgccaaattcgcaaagaccatctacctgctgtatgccaagctg
gaggaggagtacggactggcgcgccacgccatggcggtttacgaaagagcgacggaggcg
gtagaaaatgaggagagacaccagatgttcaatatctacatcaagagagcggctgaaata
tatggcgtcacgtacacgagggccatttaccagaaggctatcgaggtactccccgatgag
cattccagggacatgtgcttgcgattcgccgacatggagagcaaactcggtgaaatcgat
cgggccagagccatctattcctactgctcgcagatctgcgaccccagggtcacagctgtt
ttttggcagacgtggaaggaattcgagatccgccacggaaacgaggacactattcgagag
atgctgagaatcaagcgcagcgtccaggctacttacaatactcaggtcaacttcatgtcc
tctcagatgctgaaggccacaacgagctccacaggcaccgtctcagatcttgctccaggc
cagttaggaattgacgacatgaagatgttggagcagaaagcgcaggagctcgcggcagag
gcggcacaggataaacccaagccaaaagaaaagattctttttatcaggagtgacacatct
cgcagcgagttggccgagctcgccaaacaggccaatccagatgagatcgatattgatgat
gaggatgaggacgacgggcagggcccggaggaagtgcagctggaacagaagagcgtcccg
actgctgtctacggtggcctgaaagacgattga
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