Syngnathoides biaculeatus (alligator pipefish): 133514300
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Entry
133514300 CDS
T09681
Symbol
casc3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03013
Nucleocytoplasmic transport
sbia03015
mRNA surveillance pathway
sbia03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133514300 (casc3)
09122 Translation
03013 Nucleocytoplasmic transport
133514300 (casc3)
03015 mRNA surveillance pathway
133514300 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133514300 (casc3)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133514300 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
133514300
NCBI-ProteinID:
XP_061701848
LinkDB
All DBs
Position
16:complement(25232319..25239835)
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AA seq
702 aa
AA seq
DB search
MADRRRRRRRASQDSDDDDESGSSSGSESRESGSQSSKGRGGRDLEQPEVASERVEAKEE
VASECESEDGVGEAVLSDYDSADPEENASRSEGGEEEDADGFSDEEGPTAAGQSKHPDPA
QPVRAEADEDGEERNKEKDLEEKGKSAGERQSGDGQESTGNPETKAGGQSGQQLDDDEDR
KNPAYIPRKGLFFEHDVRGHAQEEERPKGRNRKLWKDEGRWEHDKFREEEQAPKSREELI
ASYGYDIRNGERTFAHRRPRSSASPNREQRWQEGGERAVRSWQSSRGGGGGGGGFFGRGG
PPHRASPGSVPLGSSQRGNATRGRPSHLPVQPQFGGGDAHAPLLHPRERAGGKGPPVPAA
ASRGCRSGAGRAADDPPLGKDGEDCRSPSTQTPSVQQVAYRSKSPTQQPQEKRGGAAQPP
HTSAATREASPPAERPVERKSYSLARRSRSRPAELGGKQTSVEEVAGVKNTVGGGALTEL
DQDVARLSLVSGQTWNQNPASYVHSQIRSLRGGLSIPSGPPPFSGLDEMSGGANRAKRYS
SQRQRGVAEAAPLHIGVMEGHYFEPMTFQGAIYTHGDAPAPVAPQGMLVQPEMHIPHPGL
HPHQSGGPIANPGLYGGPPVSLPPGQPQQLLPPPFYPPPGVMTFPYPAMYPSPQGQSQVT
YGGVTYYDTMQQQAQPKPSPPRRTSQPVTVKPPPPDVPFASE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcggaggaggcgcgcgtcccaggacagcgatgacgacgacgag
tccggttcctcttcggggtcggagagccgcgaatcaggctcccagtcgagcaagggccgc
ggcggcagagaccttgaacagccagaggtcgcttccgagcgggttgaggccaaggaggaa
gtggcctccgagtgtgagagtgaagatggagtaggggaagctgtcctctcggactacgac
agcgcagatcccgaggaaaacgcctctcgctcggagggaggagaggaagaggatgcggac
ggattcagcgatgaagaaggtccgacagcggccggccagtccaaacatcctgatccggcc
caaccggttcgagcggaggctgatgaagatggggaagaacggaataaagagaaggatttg
gaggaaaaaggaaagtcggcaggagagcgacagagcggtgacggtcaggagtccaccgga
aacccggaaaccaaagcgggaggacagtccgggcagcagctggacgacgacgaggaccgc
aaaaacccggcttacatccctcgtaagggtctctttttcgagcacgacgtcagaggccac
gcccaggaggaggaaaggcccaaaggcagaaacaggaagctgtggaaggacgaagggcgc
tgggagcacgacaagttccgcgaggaagagcaagcgcccaagagccgtgaggagctcatt
gccagctacggttatgacatccggaacggcgagcggacctttgcccatcggcggcctcgg
tcgtctgcatctcccaacagggagcagcggtggcaggagggcggggagcgagcggtgcgc
tcttggcagagcagtcgaggaggaggaggaggaggaggagggttttttggccgaggcggt
cctccccaccgtgcttctcccggttctgtcccactcgggtcaagccagcgcggtaacgct
acccgtggccgaccatcccacctcccggtgcaaccccagttcggaggcggtgacgcccac
gctcctcttcttcatccgcgagaaagagcgggtggtaaaggcccgcctgtgccggcggcc
gccagcaggggatgccgtagcggggccgggagggctgcggacgacccgccgctcggcaaa
gatggcgaagactgccgctcgccgagtacccaaaccccgtcggttcagcaggtggcgtat
cgcagcaagtcccctacgcaacagccccaagaaaagcgagggggtgccgctcaacccccc
catacgtcagcagccacccgggaggcctcgccacccgccgaacggcccgtcgaacgaaag
tcgtactcgctggcccgcagaagtcgctctcggccggctgagttgggcggcaaacagacg
tcggtggaggaggtggcgggggtgaagaacacagtggggggcggcgctttgactgagctg
gaccaggacgtggcccgactaagtctggtgtctggacagacctggaaccagaatcctgct
tcctacgtacactcgcagatcagaagcttgagaggcggcttgtccatcccgtccggcccg
cctccgttctcaggtttggacgagatgtcgggcggcgccaatcgcgccaagcgttactcc
tcccagcgccaaagaggcgtggccgaggcggcccccctgcacatcggcgtcatggaggga
cactactttgaacccatgacgttccagggagcgatttacacgcacggtgacgcacccgcc
cccgtcgcgcctcagggcatgctggtccagcccgagatgcacatcccccatcctggactg
catccgcaccagtcgggaggccccatagcaaaccccggcctctacggaggcccgcctgta
tctctgccgccagggcaaccgcaacaactattgccaccgcctttctaccctccgccgggg
gtcatgaccttcccttacccggccatgtacccgagccctcagggtcaatcgcaggtgacg
tacgggggcgtgacctattatgacacgatgcagcagcaggctcagcccaaaccttcgccg
ccccgccgcacgtcccaacccgttaccgtcaagccccctcctcccgatgtgccctttgcc
tcggagtga
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