Syngnathoides biaculeatus (alligator pipefish): 133514355
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Entry
133514355 CDS
T09681
Symbol
cacna1ia
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04010
MAPK signaling pathway
sbia04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
133514355 (cacna1ia)
04020 Calcium signaling pathway
133514355 (cacna1ia)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sbia04040
]
133514355 (cacna1ia)
Ion channels [BR:
sbia04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
133514355 (cacna1ia)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
ETRAMP
TMEM208_SND2
Motif
Other DBs
NCBI-GeneID:
133514355
NCBI-ProteinID:
XP_061701969
LinkDB
All DBs
Position
16:15721391..15830564
Genome browser
AA seq
2348 aa
AA seq
DB search
MTSEECPVPLGNISPAVPGHHEEYGSAQADDIIEEACPGDDASIGSDLSTLVVPYPELAP
VVFFCLKQTTCPRSWCIRMVSSPWFERISIMVILLNCVTLGMYQPCENIDCTSDRCQILQ
AFDAFIYIFFALEMVVKMVALGIFGRRCYLGDTWNRLDFFIVMAGMVEYSLDLQNINLSA
IRTVRVLRPLKAINRVPSMRILVNLLLDTLPMLGNVLLLCFFVFFIFGIIGVQLWAGLLR
NRCYLEENFTLSSGLTPPPPYYRPEEDDERPFICSLASDNGIMSCSDVPARREGGQTCCL
DKEDALHRQALGLSPEPMANGSGAGDVMGLCINWHQYYTRCHTGSSNPHKGAINFDNIVY
AWIVIFQVITLEGWVEIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETK
QREHQLMQEQRAQCLSSSTLASMAEPGDCYEEIFQLVCHVLRKARRRSAALYYTLRGKPP
PAGGGRGNRRGGINQNGERHHSRHLKLTHCPHQSKQDHDFQPLGNSISVNPQDCPLCALA
QEEGPRTAGDDEDEGDAVKETDKEENHLEERGDANEGKKKKKKRSCFGHCKDMWDEIRRK
LWGIVESKYFSRGIMIAILINTISMGIEHHNQPEELTNVLEICNIVFTSMFTLEMILKLT
AFGFFDYLRNPYNIFDGIIVIISVCEIIGQADGGLSVLRTFRLLRVIKLVRFMPALRRQL
VVLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKFSLKTDAGDTVPDRKNFDSLLWAIV
TVFQILTQEDWNMVLYNGMASTSPCAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDAN
RSYSDDDRSSCNFEDNDKQKDSLHLSDPKICTLTPNGHLDLGPLPASLFPGERLSFALGS
RKNSAISLGRANLDQRAAYPGRSYHNWGRPLPRQPQASWARRSSWNSLIGGRPCSSSSPS
ASPAFTATSARTFYGYGLGGLGGVVGGSLRIRGPRASSSPHRHLHSIHPDEEESLLSPPA
VASHTLHIRHPLLQGHFVPRRDRRALSLELPHLLQVPGAPYPPPLSHRPVSPAVLHAHQR
KSFSGGLVIGGEGGFESLSIIGGVHQDCNGKTSLAQLLHPPLKHQTEQASRTNHQRLISE
VFPQVNTRSKGQEDMDDELDYSLCFRVQKMLEAHKPDWCETRGDWSVFLFSPQNKFRQIC
QSIIAHKLFDYVVLAFIFSNCITVALERPKILQGSLERVFLTISNYIFTAIFVGEMTLKV
VSMGLYMGEQAYLRSSWNILDGFLVFVSLIDIVVSMAGGAKILGVLRVLRLLRTLRPLRV
ISRAPGLKLVVETLITSLKPIGNIVLICCAFFIIFGILGVQLFKGKFFYCLGPDVKNITN
KSDCLQANYKWVHHKYNFDNLGQALMSLFVLASKDGWVNIMYHGLDAVGVDQQPVTNNNP
WMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEVEEAKRREEKRQRRMEKKRRKAQ
KLPYYASYSNVRLMIHTLCTNHYLDLIITFIICINVITMSLEHYNQPHSLDLALKYCNYF
FTSTFVLESILKLIAFGFRRFFKERWNQLDLAIVLLSVMGITLEEIKISAALPINPTIIR
IMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGELV
CNQDYPCEGMSRHATFENFGMAFLTLFQVSTGDNWNGIMKDTLRECPPDHATDVDYACNP
SLQFISPMYFVSFVLTAQFVLINVVVAVLMKHLDDSNKEAQEEAEMDAEIELELAQGTLC
CMGAPGCGGAGAEKGAVAAGSAPSGEDCRREGGGRGGRTRTAASATAVPYSSSDANRPLY
SPAHESQWLDSVSLLIKDTLEGEMLMIDNLSGSVFHHYSSPLPICKDCRGHPQEVTSLHQ
IRMAEIEQASLKSEQLSDKSSSPALPDDLSLDEHTAYQLLVRERKVKCSSGSCSSAEAAG
EGNHQVHQTVVQSQVQGLSHISRTTCKVEMEAVLQDIEMHTNSPNMCSPYYSPSGLSSDT
KERKTEAKEEASSISPLLSLPAEFFHSTGAAIPTPPRSRSLRLSRGLRLTSPASWAAFRS
PGGHSKILCTQYPSHSDSSLATGSSEGSLQTTLEEGLSFSVSPPQNMDLPAAPLPHQCPL
REDDTSISSPVQTLRLRPSPSSALTLQATIGQQRSQSSGRGSTSPGFTRDDSIDPSDEDL
GIVIGSSIGGCGSSQAGNSEHLSETMSSLSLTSLLSPTSLAYPGGAVKKCNSTGSLDQGG
MLLSSRGRETRREILGLELMDPQGFLANPWSGVLAEARGDGDEMGDGSQGFRGKSSSQTT
VGPFRKNR
NT seq
7047 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcgaggagtgtcctgtgccgctggggaacatttccccggcagtgccagggcat
cacgaggagtatggctcggcgcaggctgatgacatcatcgaggaagcgtgtccaggcgac
gacgccagcatcggaagtgacctgagcacgcttgtggtgccctaccccgagctggcgccc
gtggtcttcttctgcctcaagcagaccacctgcccccgcagctggtgcatccgtatggtt
tccagtccgtggttcgagaggattagcatcatggtcatcttgctcaactgtgtgacactc
ggaatgtaccaaccctgcgagaacatcgactgcacctcggaccgctgccagatcctccag
gctttcgatgccttcatctacatcttttttgcactggagatggtggtgaagatggtggct
ctcggaatctttggtcgtcgctgttatctgggagatacttggaacaggttggacttcttc
attgtcatggctggaatggtagaatactctctggatctgcagaacatcaacctgtcggcc
attaggacggtgcgggttcttcgtcccctgaaagccatcaacagagtgccaagcatgcgt
atcctggtgaacttgctgctggacacgttacccatgctaggcaacgtgcttctgctatgc
ttctttgtcttcttcatctttggaattattggtgtgcagctgtgggcggggcttctgagg
aaccgctgttacctggaagagaacttcaccctctcttcgggtttgaccccgccaccgccg
tactaccgacccgaggaggatgacgagcgccccttcatctgctcgctggcatctgacaac
ggcatcatgtcatgttccgacgtccccgcgaggcgagaaggaggccagacgtgctgcctg
gacaaggaggacgcgctacacagacaagcgctgggtctcagtcctgagcccatggcgaac
ggcagcggcgccggtgacgtcatgggcctgtgcatcaactggcaccagtattacacccgc
tgccacacggggagcagcaacccccacaaaggtgcaatcaacttcgacaatatcgtctat
gcctggattgtcatttttcaggtgatcactttggaaggctgggtagagattatgtattat
gtaatggatgcccactccttctacaacttcatctacttcatcttactcatcattgttggt
tccttcttcatgatcaacctttgcctggtggtcatcgccactcaattttcagagaccaag
cagcgggagcaccagctgatgcaggagcagagggcgcagtgcctttcctcgtccacgctg
gccagcatggcggagccgggagattgctacgaggaaatcttccagctggtctgccacgtc
ctgcgcaaggccagacggagatcggcagctctctactacacgctgaggggcaagcccccg
cctgctggtggaggaagaggcaacaggcgaggtggaatcaatcagaacggagaacggcac
cattcgaggcatctgaaattaacccactgtccacaccaaagcaagcaagaccatgacttc
caaccactgggaaactccatcagcgtgaatccacaggactgccctttgtgtgcattagcg
caggaagaaggcccgaggaccgcgggagacgacgaggacgagggggacgctgtgaaggag
acggacaaggaagagaaccacttagaggagcggggtgacgctaatgaagggaagaagaaa
aagaagaaaaggagctgctttggacactgtaaggacatgtgggacgaaataagaaggaaa
ctgtggggcatcgtggagagcaagtacttcagcaggggcatcatgatcgctattctcatc
aacaccatcagtatgggcatcgagcatcacaatcagccagaggagctgacgaatgtgctg
gagatctgcaacattgtcttcaccagcatgttcaccctggagatgatcctcaagctgacg
gcctttggtttctttgactacctgaggaacccctacaacatcttcgatggcatcatcgtc
atcatcagtgtgtgtgagattatcggccaggctgatggtggcttgtcagtgctgaggacc
ttcagactgctgcgggtcattaagttggtcaggttcatgcccgccctgaggcgtcagctg
gtggttctgatgaagacgatggacaacgtggcaactttctgcatgctgctcatgctcttc
atcttcatcttcagtatccttgggatgcacatctttggttgcaagttcagtctgaagaca
gatgcaggagacaccgtgcctgacaggaagaactttgattccctcctgtgggccatcgtc
actgtctttcagattctgactcaggaggactggaacatggtgttgtacaatggcatggct
tccacctcaccctgtgctgccctctactttgtcgcgttgatgacctttggaaactatgtg
ctcttcaatttattggtggccatcttggttgagggctttcaagctgagggagatgcaaac
cgctcttactccgatgatgacaggtcttcctgtaattttgaagacaatgataagcagaag
gactctctgcacctctcagacccaaagatctgcacactgaccccgaatggacacttggac
ttgggcccgctgcctgctagcctatttcctggagagaggctcagctttgctctcgggtcg
aggaagaacagtgctatttcccttggcagggccaacctggaccagagggctgcgtatcca
ggtcgcagttaccacaactggggtcgcccactgccccgccagcctcaggcctcatgggct
cgtcgctccagttggaacagcctgatcggaggccgcccctgttcatcctcatcaccctca
gctagtccagccttcaccgccacttctgccaggactttctatggctacggcttaggaggc
ctgggaggggtcgttggcggaagtctccgtatccgaggtccccgtgcctcctcatcccca
caccgtcatctccacagcatacacccagatgaggaggaaagcctactctcacctccggct
gttgcttctcacactcttcatattcggcatcctctcctccagggacattttgtacccagg
agggaccgtcgggctttatccctcgagcttccgcacctgctacaggtccccggggcccca
tatccacctccactatcacatcgtcctgtgtcccccgcagtgctgcacgcccaccagagg
aagagcttctctggggggttggttatcggtggcgagggtggctttgagagtctgagcatc
atcgggggagtgcaccaagactgtaatggcaagacttccctggcacagcttctccaccca
cctcttaaacatcagactgagcaggctagcaggacaaaccaccaaagactgatttcagag
gtttttcctcaggtgaacacgcgtagcaaggggcaagaagacatggatgatgagcttgac
tatagcttgtgtttccgcgtccaaaagatgttggaggcgcacaagccagattggtgcgag
accagaggggactggtcagtttttctcttctctccacagaacaagtttcgacagatctgc
cagtccatcatcgcacacaagctgtttgattacgtggtgctggccttcatcttctccaat
tgcatcacagtagctctcgagaggcccaagatcctccaaggcagcttggaaagggtgttt
ctcaccatatccaactacatctttactgccatctttgtgggcgagatgacactcaaggtg
gtttccatggggctgtacatgggggagcaggcatatttgcggagcagctggaacattctg
gatggtttcctggttttcgtgtctttaattgacattgtcgtgtcgatggctggcggggcg
aagatcctgggtgtgctcagagtcctccgtctgctgagaacattgcgtcctctcagggtg
atcagcagggctccaggtctgaagctggtggtggaaaccctaatcacctccctcaagccc
atcggcaacatcgtcctcatctgttgtgctttcttcattatctttggcattcttggtgtc
cagctgtttaaaggcaagttcttctactgcttggggcctgatgttaaaaatatcaccaac
aaatccgattgtctccaagccaactacaagtgggttcatcacaagtacaactttgacaac
ttgggccaggccttgatgtccttgtttgtactggcctctaaggacggctgggtcaacatc
atgtatcatggcctggatgctgtcggtgtggaccaacagccggtgaccaacaacaacccc
tggatgctgctttatttcatctccttcctcctcatcgtcagcttcttcgtcctcaacatg
ttcgtcggtgtggtggtggagaactttcacaagtgccgccagcaccaggaggtggaggag
gccaagaggcgcgaggagaaacggcagcgccgaatggaaaaaaagaggagaaaagcccaa
aagcttccctactatgccagctacagcaacgtgcgcctcatgatccacacactgtgcaca
aaccactacctggacctcatcatcaccttcatcatctgcatcaacgtcatcacgatgtcc
ctcgagcactacaatcaacctcactctctagatctcgccctgaagtactgcaattatttc
ttcacctccacttttgtgctggaatccatcctcaagctcatcgccttcggcttcaggcgc
ttcttcaaagagaggtggaaccagctcgaccttgccatcgtgcttctttctgtgatgggc
atcacactggaggagatcaaaatcagcgctgcgctgccaatcaacccgactattatccgg
atcatgagagtactgaggatagcgagagtcctgaagttgctgaagatggcgacaggaatg
agagccctgttggatacggtggtccaagccctgcctcaggtgggtaacctgggtctgctc
ttcatgctactgtttttcatctacgccgccttaggagtagagcttttcggagaacttgtt
tgcaatcaagactacccgtgcgagggcatgagtcgtcacgctacctttgagaactttggc
atggccttcctgacattgtttcaagtctctacgggcgacaactggaatggcatcatgaag
gacacattgcgggagtgcccaccagatcacgccactgatgtggactacgcctgcaatccc
agccttcagtttatctcgcccatgtactttgtctccttcgtgctcaccgcccagttcgtg
ctcatcaacgtggtggtggccgtgctgatgaagcacctggacgactccaacaaggaggcc
caagaggaggcggagatggatgcagaaattgagctggagctggcccagggcaccctctgt
tgcatgggcgcccccggctgcggaggcgcaggggcggagaaaggcgcggtcgccgctgga
tcggcccccagcggcgaggactgcaggagggagggaggaggccgaggagggaggacccgc
acggcagccagtgcaaccgcggtgccgtacagctcctctgatgccaaccggccattgtac
tcgccagcccatgaaagccagtggttggacagcgtatctctcctgatcaaggatacgtta
gaaggggagatgctgatgatcgacaatctctctggttctgtcttccaccattactcctcc
cctctccccatctgtaaagactgcaggggccacccgcaagaggtgacttccttacaccag
atcaggatggcggagatcgagcaggcttcgctgaagtcggagcaactctcggacaagtct
tcttctcccgccctccctgatgacctcagcttggacgagcatacggcctaccagctgctc
gtacgcgaacgcaaggtaaagtgtagcagtggctcttgcagctctgcggaggcagcaggg
gaaggaaatcaccaggtccaccagacagttgtccagagccaggtccaagggctaagccac
atctccaggactacctgcaaagtagagatggaagctgtgctgcaggatatagaaatgcat
acaaattcacctaatatgtgctcaccttactatagcccaagtggtctttccagcgacacc
aaggagagaaaaaccgaggcaaaagaagaagccagcagcatctctccgctgctgtccctg
cccgctgagttcttccactcgacaggggccgccatccccacaccgccccgcagcagaagc
ctgaggttgtcgaggggcctgaggttgacctcccctgcttcgtgggctgcattccgttcc
cctggaggccatagcaagatactgtgtactcagtatccatcccacagtgactcgtcactc
gcgactggcagctccgaaggcagcctccagaccaccctggaagaaggccttagcttcagc
gtctctccaccgcagaacatggacttgccagcagctcctttaccacatcagtgcccactg
cgcgaagacgacacaagcatttcttccccggtccagaccttgagactgaggccgagcccc
tcgtcggctttaaccctgcaggccactattggccaacaacggagccaaagcagcgggcga
ggtagcacgagcccgggcttcacacgggatgactccattgacccttcggacgaggacctg
ggtatagtcatcgggtcttccattggtggttgcgggtccagtcaagcgggcaatagtgaa
cacttgtcagagactatgagcagcttgtccctgacatcactgctgtcgcctacttcccta
gcatatcctggaggagcagtgaaaaagtgcaatagcacgggaagcctggaccaagggggg
atgctgctgtcatccagaggacgagagacccgccgagagattctaggcctggagctcatg
gacccccagggtttcttggccaacccctggtcgggggtattagccgaggcaagaggagac
ggagacgaaatgggagatggatcgcaagggttcagagggaaaagctcaagccaaacaaca
gtaggaccttttcgcaaaaacagatga
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integrated database retrieval system
