Syngnathoides biaculeatus (alligator pipefish): 133514533
Help
Entry
133514533 CDS
T09681
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133514533 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbia03041
]
133514533 (ddx5)
03009 Ribosome biogenesis [BR:
sbia03009
]
133514533 (ddx5)
Enzymes [BR:
sbia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133514533 (ddx5)
Spliceosome [BR:
sbia03041
]
Complex A
U1 snRNP components
U1 related factors
133514533 (ddx5)
Complex B
133514533 (ddx5)
Ribosome biogenesis [BR:
sbia03009
]
Eukaryotic type
Pre-60S particles
Helicases
133514533 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
133514533
NCBI-ProteinID:
XP_061702287
LinkDB
All DBs
Position
16:11750735..11756170
Genome browser
AA seq
616 aa
AA seq
DB search
MPGYSDRDRGRDRDRDRGYGGGPHRFGGSRGGGGGGGGKFGNPGERLRKKHWNLDELPKF
EKNFYQEHPDVSRRSLPEVEQYRRAKTITVKGRNCPNPIVNFHEASFPSYVMDVINKQNW
TEPTPIQAQGWPLALSGHDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLA
PTRELAQQVQQVAAEYGRASRLKTTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEA
GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL
KDYVQINVGALQLSANHNILQIVDVCSDGEKENKLIRLLEEIMSEKENKTIIFVETKRRC
DDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVI
NFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNVRQASDLISVLREANQAINPKLLQM
GEIRGGRSRGGRGGDFDRRDRYSSGRRDFGSFRDRDSSRGYDNGPNKSFSANAQNGGYGG
NGGGSNGFSGGYNGNGQSFNTQAAPFPPQNNFQAQPNGASHPASFPFPPGQAPQQQQQQP
HPPPLASYPMPPQFPQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgccgggctattccgacagagatcgtggccgagaccgggacagagatagaggctatggc
ggcggtcctcatcgctttggtggtagccgtggtggtggtggaggaggtggaggaaagttc
ggcaaccccggtgagcgcttgcggaagaaacactggaatctggatgagcttcccaagttt
gagaaaaacttttaccaggagcacccagacgtctcgaggaggtctctgccagaagttgaa
caatatagaagggccaaaacaatcacggtgaaggggagaaactgccctaatccaattgta
aatttccacgaggcaagctttccatcctacgttatggatgtgatcaacaagcaaaactgg
acagagccaacccctattcaggctcagggttggcctttagcactgagtggccatgatatg
gttggcattgcacagactggttctggcaaaactctctcgtatctgttacctgcaattgtt
cacatcaaccatcaacctttcctggagcgtggtgacggccctatttgcttggtgttggcc
ccaactcgtgaactggcacagcaagtgcaacaggtggctgcagagtatggcagagcttct
cgcctcaagaccacctgcatctatggaggagcaccaaaggggccacagattcgtgacctt
gaaagaggtgtggagatctgcatcgcgactccaggcagactaattgacttccttgaagcg
ggaaagaccaacttgcgccgttgcacttacctcgtattggatgaggctgacagaatgctg
gacatgggatttgaaccacagatcaggaagatagttgaccagatcagacctgatcgccag
acactgatgtggagtgccacctggccaaaggaggtgcgtcagctggctgaagacttcctt
aaagactatgtgcagatcaatgttggggctctgcagctcagtgccaaccataacatcctt
caaatagttgacgtgtgcagtgatggagagaaagaaaacaaactcattcgcctgctggag
gaaataatgagcgagaaggagaacaagactatcatctttgttgagacaaagaggcgatgt
gatgacctcacaagaaggatgaggcgtgacgggtggcctgctatgggaatccatggagat
aaaagccaacaggagagagattgggttcttaatgagtttaaatatggaaaggctcctatt
ctgattgctacagatgttgcatctcgtggtctagatgttgaggacgtgaaatttgtcatc
aactttgactaccccaacaactctgaggattatatccaccgcattggcagaacggcccgt
agccaaaagactggcacggcctacaccttcttcactcccaacaacgtgcgacaggccagc
gacctcatctctgttctacgcgaggccaaccaggccatcaaccccaagctcctccaaatg
ggtgaaatcagaggaggtcgttcaaggggaggcagaggtggtgattttgaccgcagggat
cggtattcttctggaaggcgagattttggcagttttagggacagggatagtagtagaggc
tatgacaacggaccaaacaaaagctttagcgcaaatgctcaaaacggaggctacgggggc
aatggcggcggcagtaacggctttagcggaggctacaatggcaacggacagtcatttaac
acccaagcggcacccttcccccctcagaacaactttcaagcccagccgaacggcgcaagt
caccccgcatcattccccttccccccagggcaggccccccagcagcagcagcagcagccg
caccctcccccgcttgcgtcctatcccatgccgccgcagttccctcagtaa
DBGET
integrated database retrieval system
