Syngnathoides biaculeatus (alligator pipefish): 133514875
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Entry
133514875 CDS
T09681
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit isoform X1
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03030
DNA replication
sbia03410
Base excision repair
sbia03420
Nucleotide excision repair
sbia03430
Mismatch repair
sbia03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133514875 (pold1)
03410 Base excision repair
133514875 (pold1)
03420 Nucleotide excision repair
133514875 (pold1)
03430 Mismatch repair
133514875 (pold1)
03440 Homologous recombination
133514875 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbia03032
]
133514875 (pold1)
03400 DNA repair and recombination proteins [BR:
sbia03400
]
133514875 (pold1)
Enzymes [BR:
sbia01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
133514875 (pold1)
DNA replication proteins [BR:
sbia03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
133514875 (pold1)
DNA repair and recombination proteins [BR:
sbia03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
133514875 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
133514875 (pold1)
BRITE hierarchy
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
133514875
NCBI-ProteinID:
XP_061702920
LinkDB
All DBs
Position
16:complement(12725918..12740268)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSTSGSTAGPPKSHVTSFSSQNGGGLQAGNQIPRFLPRIKEEWREQLGKIVVMDFKRRKG
GPFLGGVSQTKRTKMAGEWEDSPSHFEEELSMFDDVDMDSEEMEGQAGHDVIPVGDLFST
DLNPRWRRPHAPSLDPSSDPLVFQQIDLDYYLGAAVAGMPGQLHGKVPIIRMFGVTDSGN
SVCCHVHGFAPYFYVPAPKGFTPDYLGEFKRELNSAVLKDMRSNKDNISVTVLAVDITRK
ENMYGYHGKQILDFLRITMAMPRLIAPAKRLLEQGLKFGPFPIHCFQAFEANIDFEIRFM
VDSNVVGCCWIELPTGKFRVREEKSSGCTDSKHPGKESLCQYEVDVAWTDLISHPAEGDW
QRIAPLRVLSFDIECAGRKGIFPEADKDPVIQIASMVQRQGETEPFIRTVFTLQSCASIV
GSQILCFTQEKQLLQSWAEFLRTVDADIITGYNIQNFDFPYLLNRAAALKADLFPYLGRV
RGIKSVIRDLNFQSKQMGRRENKIINMEGRVQFDLLQVLLRDYKLRSYTLNAVSFHFLQE
QKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLQKLMCVINYMEMARVTGVPLT
YLLSRGQQIKVVSQLLRQAAKQDLVMPVVKSQGGEDYTGATVIEPEKGYYSVPIATLDFS
SLYPSIMMAHNLCYTTLLQKGAVEKLGLSPADFIRTPTGDQFVKSSVRKGLLPHILENLL
SARKRAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTGFG
RQMIEETKQLVESKYIISNGYQADAKVIYGDTDSVMVKLGVATVQEAMTIGREAAEWVSS
HFVAPIKLEFEKVYFPYLLINKKRYAGLYFSSNADVHDKMDCKGIETVRRDNCPLVANLI
NTCLQKILIDRDPQGAVAHAKEVISDLLCNRIDISQLVITKELTRTAQEYAGKQAHVELA
ERMKKRDAGSAPNLGDRVPYVIVKAAKGAAAYMKSEDPIYVLENNIPIDTQHYLDQQLSK
PLLRIFEPILGESKAENVLLKGDHTRCKTVLTSKVGGLMAFAQKRSTCIGCKAVLKTDAA
VCDYCKKKESELYQKEIFHLNTLEERFSRLWTQCQRCQGSLHEDVLCTSRDCPIFYMRKK
VQKDLDDQSKLVARFGW
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgagcacttccgggtcaaccgcgggaccgcctaaatcacacgtcacttccttttcctcc
caaaatgggggcgggctacaagccggaaatcagattccgcgctttctgcccagaattaaa
gaagagtggcgggagcagttgggaaaaattgtagtcatggattttaaaaggcgcaagggt
ggaccttttttgggtggcgtttcccagactaaacgcaccaagatggctggtgaatgggag
gacagtccttcacactttgaggaggaattgtccatgtttgatgacgtagacatggattcc
gaggagatggaggggcaggccggccatgatgtcattcctgttggtgacctcttttcgaca
gacctcaaccctcgctggcggaggcctcatgccccttcgctcgatccatcctctgatcct
ttggtttttcaacagattgatctggactattatttaggggcggctgtggcaggcatgccc
ggtcagttacacggaaaagtccccatcattcggatgtttggtgtgacggacagcggaaac
agtgtgtgctgtcatgttcacggatttgcaccctacttctatgtcccagccccaaaaggc
ttcacaccggattacttgggcgagtttaaaagagagctcaactctgctgtgctgaaggac
atgcgctccaacaaagataacatctctgtcactgtgttggctgtggacatcacccggaaa
gaaaatatgtacggttaccacggtaaacaaatcttggatttcttgcggataaccatggcg
atgcctcgtctcattgcccccgccaaacgactgctggagcagggcttgaaattcggacct
tttcccatccattgtttccaagcctttgaggccaacattgattttgaaataagattcatg
gtggacagcaacgttgttggatgttgctggatcgagctgcctacaggcaagttcagagtc
cgtgaagaaaagagttcagggtgcacagattccaagcatccaggcaaggagtctctgtgt
cagtatgaggttgatgtagcgtggaccgacttgatcagtcatccagcagaaggtgactgg
cagaggatcgcaccgcttcgtgtcctcagttttgacattgaatgtgctgggaggaaagga
atcttcccagaagcagacaaagatcctgtgattcagatcgcatccatggtgcagcgacag
ggtgagacggagcccttcatccgtacggtcttcacgctccagtcgtgtgccagcattgtg
ggctctcagattttgtgcttcactcaagagaagcagcttctgcagagctgggctgagttt
ttaagaacagtggacgcggacatcatcacaggatacaatatccaaaactttgactttccc
tacttgctcaacagggctgctgctttaaaggccgacctgtttccttatttgggccgtgtg
agagggatcaagtcagtgatacgagacctcaacttccagagcaagcagatgggccgcaga
gaaaacaagatcatcaacatggagggccgtgttcagtttgatctactgcaggttctcctc
agggactacaaactgcggtcctacacactgaatgctgtgagtttccactttctgcaagaa
cagaaggaggacgtgcagcactccattatcactgatcttcagaatggcaacgaacagacg
cggcgacgtttggctgtctactgcctgaaagacgcctttctgccactgcggctgctgcag
aagctgatgtgcgtgatcaattacatggagatggccagagtgaccggtgtgcctctcacc
tatctgttgtccagagggcagcagatcaaagttgtctcccagctcctgcgacaggcagcc
aaacaagatctggtgatgcctgttgtgaagtcgcagggaggagaagattacactggcgcc
acagttattgagccagagaaaggctattacagtgttcccatcgccacattggatttttca
tccttgtatccatccattatgatggctcacaatctgtgttacaccactttgctgcagaaa
ggtgccgtggaaaaacttgggttgtcaccagcggacttcatcaggacacccactggtgat
caatttgtaaagagttcggtgaggaaaggcctcctaccacatatcctggagaacctgctt
tcggccagaaagagggcgaaggcggagctcaaaaaggaaacagacccttttaagaagcag
gtgctggatggtcggcagctagccctcaaaatcagtgcaaactctgtctatggcttcacg
ggggctcaggtgggcaagctgccttgcttggagatctcccagagtgtgaccgggtttgga
agacagatgattgaggaaacaaaacagttggtggagtcaaagtacatcatttccaatggt
taccaagccgatgcaaaggtcatatatggtgacaccgactctgtcatggtcaagctcggt
gtcgccacggtgcaggaggccatgaccatcggaagagaggccgcagagtgggtgtcgtct
cattttgtagcccccatcaagctggaatttgagaaggtgtacttcccttacttgctgatc
aacaagaaacgctacgctggcctctatttctcctccaacgcagatgttcatgataagatg
gactgtaaaggcattgaaacagtccgcagagacaactgccccctggtggccaatctgatt
aacacgtgcctgcagaaaatcctcatcgacagggatccccaaggtgcagtggcgcacgcc
aaagaggtgatctccgacctgttgtgcaaccgcatcgacatcagccagctggtcatcacc
aaggagctgacgcggacggcccaggagtacgctggcaagcaggcgcacgtggagctggca
gagaggatgaagaagagagacgcaggcagcgctcccaacctgggggaccgagttccgtat
gtgattgtgaaggctgccaaaggagcagcagcgtacatgaagtccgaggatcccatctat
gtgctggaaaacaacatccccatcgacacccagcactacctggaccagcagctatccaag
cccctgctgaggatatttgagcccattttgggggagagcaaggcagaaaacgtgctcctc
aagggcgaccacacgcgctgtaagacggttttgacgtcgaaggtcggcggcctcatggcg
ttcgctcagaagaggagcacttgtattggctgcaaagctgtgctcaagacagatgctgct
gtgtgtgattactgtaagaagaaagagtctgaactgtatcaaaaagagattttccatctg
aacactctggaggaacgtttttctcgactgtggactcaatgtcagcgttgtcaaggttcc
ctccacgaagacgtcctctgtaccagccgcgactgccccatcttctacatgaggaagaag
gttcaaaaagatctggacgatcagagcaagctggtggcgcggtttggatggtga
DBGET
integrated database retrieval system
