Syngnathoides biaculeatus (alligator pipefish): 133515038
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Entry
133515038 CDS
T09681
Symbol
grin2ca
Name
(RefSeq) glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04020
Calcium signaling pathway
sbia04080
Neuroactive ligand-receptor interaction
sbia04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
133515038 (grin2ca)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
133515038 (grin2ca)
04082 Neuroactive ligand signaling
133515038 (grin2ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sbia04040
]
133515038 (grin2ca)
Ion channels [BR:
sbia04040
]
Ligand-gated channels
Glutamate (ionotropic)
133515038 (grin2ca)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
NMDAR2_C
ANF_receptor
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
133515038
NCBI-ProteinID:
XP_061703245
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All DBs
Position
16:complement(7452386..7501899)
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AA seq
1403 aa
AA seq
DB search
MGVHLSASLWWPLLLLLLYSATSCCSGRPFGIPAPAVNVAVVFSGSAYQAEIKGRLSREN
FMDLPLEVNPITVLVNNTNPRALLTRICDTLSTNRVHGVVFEDNVGSEAVAQILDFISTQ
TGVPIVGISGGSAVVLPYKAEGSNFLQLGSSIEQQINGMFKVMEEYNWDSFVVITSLYPG
YETYVDYVKAYIDSSYFIWELQDVLTFDMSADATNDIRARRLLQQIDAQVLLVYCSHEEA
QYLFTMAADAGLVGPGYIWIIPSLALGNPDMSPPDSFPVGLISIITDRWRMSLRKRVRDG
VAIVVKGVQSYRKQRGFSPEGQNDCHNPVKTMSTNETLFRHMLNVTWEHNDFSFNANGYL
VNPAMNIITLDRERQWDKVGTYEMSILQMRYPVWPRYGSYLEPVSDYRHLTVATLEERPF
VIVEAVDPLTGTCVSNTVPCRRQSNKTEAIVGHTEPYTKLCCKGFCIDILKKLSRNIKFS
YDLYLVTNGKHGKLVRGIWNGMIGEVFYKRADMAIGSLTINEERSEIIDFSVPFVETGIS
VMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAITVFVFEYCSPVGYNRSLVTAKDP
GGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMI
QEQYIDTVSGLSDKKFQKPQEQYPPFRFGTVPNGSTERNIRSNYPEMHSHMVKYNQKGVE
DALNSLKTGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKDSRWKRP
IDLALLQFLADGDTQKLQTVWLTGICRNEKKEVMSSKLDIDNMAGVFYMLLVAMGLSLLV
FAWEHLLYWRLRHSVRKSDRLDFLLAISRGIYSCFNGVEQTDRNGSIQSPDVTSNYSQAN
MLKMLKTAKDMVSSARVENSLDSATKTLESWSRRGTADNTRGGLPPRVGTNADVAHCRLP
YIASITDNHSPYPVRSRTPTFPVHYGDAVAQPLLDKPRVITRPTPLRYTLPARHNLLERT
LPISSLSSPHLAIPDVSPSPSVQPHQANRLYVGNPVRHPASPFVTYREIQVPNVYMEHKF
PLRRKLSYPPDCGGRRRHSYVFDAPDLRSRADYDEPRSCLAELRANQLMKNHAPDTTQGH
YPCAATGHYPGATPGHYPSAAASCNSCMKSYPEPEMDDVPLLGKDKLNRRASFLKATWGN
ERIRQVDETKPSTSTSPRTDMPDLFPRVVVPANAKSHKLYGSLGHNLSCYPLAAEPAYLD
PAHMGSYPYKQKLKYSDTTRLPSYREAILQNTAGLRRSSSTLVHRQYSTYLNSYSDLPVY
VAPPPTQFYNSPKDMCHLFPCATHCPEHAIARPVAYQNSMFGVEREEPILAGRERRQVLV
ARRVNSPFVPKPWGRVSSLESEV
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttcatctgagcgcctccctctggtggccgctgctgctgctgctgctttacagc
gccacctcctgctgctccggccggcccttcgggatcccggcgcccgctgtgaacgtggcg
gtagtcttcagcggctcggcttaccaggcggagattaaggggcgactcagtcgcgagaac
ttcatggacctgcctctggaggtgaaccccatcactgtgctggtgaacaacaccaacccc
agagcgctgctcactcggatttgcgacacgctctccaccaaccgtgtccacggcgtggtg
ttcgaggacaatgtgggctcagaggccgtggcccagatcctggacttcatttccactcag
accggcgtgcccatcgtggggatcagcgggggctccgccgtcgtcctcccgtacaaggcg
gagggctccaacttcctgcagctaggctcatccatagagcagcaaataaatggcatgttc
aaggtaatggaggaatacaactgggacagcttcgtagtcatcaccagcctgtatccaggc
tacgagacctacgtggattatgttaaggcctatatcgatagcagctacttcatatgggag
ctccaggatgttctgacattcgatatgtcagccgacgccaccaatgacatccgagcgcga
cgtctgctgcagcagatcgacgcccaggtgctcctggtttattgttcccatgaagaggcc
cagtatctcttcaccatggcggccgatgctggactggtggggccgggctacatctggatt
attcccagtttggccctgggcaacccggacatgtcgccacccgacagtttcccagtgggg
ctcatcagcatcatcactgaccgctggaggatgagcctgagaaagagagtacgggatggc
gtggccattgttgtgaaaggcgtgcagagttaccgcaagcagaggggcttctctccagag
ggacaaaacgactgccacaatcccgtcaagactatgtctaccaatgagacgctcttcagg
cacatgctgaacgtcacctgggagcacaatgacttctccttcaacgccaacggctacttg
gtgaacccagcaatgaacatcatcactctggaccgagagaggcagtgggacaaggtgggg
acttacgagatgagcatactccagatgaggtacccagtgtggccccgctatggttcctac
ctggagcccgtttcagactacaggcacctgacagtggccacgctggaggagcgccccttt
gtcatcgtagaagccgtggaccccctgacaggaacctgcgtcagcaacacggtgccgtgc
cgacgacagtccaacaagaccgaggccatcgtgggccacaccgagccgtacactaagctg
tgctgcaaaggcttctgcatcgacatcctcaaaaagctgtcgcgcaatatcaagttctcc
tacgatctctacctggtcaccaacggcaagcacggcaagctggtgcgtggcatctggaat
ggcatgattggcgaggtcttctacaaacgtgccgacatggccatcggctcgctgaccata
aacgaagaacgctcagagattattgacttctcagtgccatttgtggagaccggcatcagt
gtcatggtggccaggagtaacggcaccgtctcgccgtctgccttcctagagccctacagt
ccggccgtgtgggtgatgatgttcgtcatgtgtctcaccgtggtggctattaccgtattc
gtcttcgaatactgcagcccagtggggtacaaccgcagtctggtgacggctaaagacccc
ggaggtcccaccttcaccattgggaagtcggtctggcttctgtggggaatcgtgttcaac
aactcagtacccatcgaaaaccccaaggggaccaccagtaagatcatggtactggtgtgg
gccttcttcgccgtcatcttcctggcatcctacacggccaacctggccgccttcatgatc
caggagcagtacattgacaccgtgtccggactgagcgacaagaagttccaaaagcctcaa
gagcaataccctccatttcgcttcggaacggtgcccaacggcagcacggagcgaaacatc
cgcagcaactaccccgagatgcactcgcacatggtcaaatacaaccagaaaggtgtcgag
gatgcgctaaacagcctcaagaccgggaagctggacgccttcatctatgacgccgcagtg
ctcaattacatggcgggtaaagacgagggctgtaaactggtgaccattggcagcggcaaa
gtgttcgccaccaccggatacggcatcgccctgcagaaggactcgcgatggaaaagaccc
atcgacctggccctgctacagttcctggctgacggcgacactcagaagctgcagaccgtg
tggctgacaggcatctgccgcaacgagaagaaggaagttatgagcagcaagctggacatc
gacaacatggcgggcgtattctacatgctgctggtggccatgggcctcagcctcttggtc
tttgcctgggagcatctgctctactggaggctgcgacactcggtgcgaaagtctgaccgc
ctcgactttctcctggccatcagcaggggcatctacagctgtttcaacggtgtggagcag
acagatcgcaatggcagcatccagagtcccgacgtcaccagcaactactcacaggctaac
atgctaaagatgctaaagacagccaaggatatggtgtcgtccgcccgagtggagaactct
ctggacagcgccaccaagaccttggagagctggagccgccgggggacagccgacaacacc
cggggaggcctcccaccccgcgtgggcaccaatgcagatgtggcacactgccgcctgccc
tacatagccagcatcaccgacaaccactccccataccctgtcagaagccgcactcctacg
ttccccgtccattatggagacgctgttgcccagcccctattggacaaaccgcgggtgatc
acccggcccacgccactgcgctatacactccccgcccgccataacctcttagagaggaca
ctgcctatctccagcctcagtagcccccacctcgccattcccgatgtgtcacccagccct
tccgtccagccccaccaagctaatcgtctctacgtgggaaacccggttcggcacccagca
tccccgtttgtcacctaccgggaaatccaggtccccaatgtctacatggagcataaattc
cccctgaggaggaagctgagttacccccctgactgtgggggccgtaggaggcacagctat
gtgttcgacgcaccggacctgagatcaagggccgactatgatgagccgcgatcctgtctg
gctgagctgcgggccaaccagctaatgaaaaaccatgccccagacaccacccagggacac
tatccttgtgcagcaacaggacactacccgggtgctacaccgggacattacccaagtgcc
gctgccagctgtaactcctgcatgaagtcatatcctgaacccgagatggatgacgttcct
ctgttgggcaaagataaactcaaccgcagagcctctttcctcaaagccacctggggcaat
gaacgcatccggcaggtggatgagaccaaaccgtccacttccacgtcaccccgcaccgac
atgcccgacctatttcctcgggtagtggtgccggccaatgccaagtcccacaagctgtat
ggcagcctggggcacaacctgtcctgctaccctctggctgctgaacctgcctacttggac
ccggctcacatggggtcatacccttacaagcagaaactcaagtactccgacaccacccgg
ctgccgtcatatcgggaggccatactgcagaacactgccggcttgcgccggtcatcgtcc
acgttggtgcacagacaatactccacctacctgaactcttactcagaccttccggtctac
gttgcaccgcccccgacccagttctacaacagccccaaagacatgtgccacctgttcccg
tgcgccacccactgcccggaacatgccattgcacggcccgtggcttaccagaacagtatg
tttggggtcgagcgggaggagcctattttggcaggcagggaacgacgtcaggtgttggtt
gcgcgccgggtgaacagtccgtttgtgccaaaaccctgggggagggtctctagcctggaa
tcggaggtgtga
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