Syngnathoides biaculeatus (alligator pipefish): 133515041
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Entry
133515041 CDS
T09681
Symbol
ciita
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
sbia01001
]
133515041 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sbia04054
]
133515041 (ciita)
Enzymes [BR:
sbia01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
133515041 (ciita)
Protein kinases [BR:
sbia01001
]
Serine/threonine kinases: Other
TAF1 family
133515041 (ciita)
Pattern recognition receptors [BR:
sbia04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
133515041 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
AAA_16
LRR_14
nSTAND_NTPase5
nSTAND3
AAA
ATPase_2
AAA_22
VapE-like_dom
TsaE
NB-ARC
DUF815
AAA_19
SRP54
nSTAND6
RNA_helicase
AAA_30
ABC_tran
PduV-EutP
RsgA_GTPase
Ploopntkinase3
MMR_HSR1
Roc
AAA_33
Motif
Other DBs
NCBI-GeneID:
133515041
NCBI-ProteinID:
XP_061703248
LinkDB
All DBs
Position
16:13891420..13901345
Genome browser
AA seq
1158 aa
AA seq
DB search
MQDVDQDPIFCPDYGALPDDLSEFMNDSYLVKILDTDGLFSDDPTLIFDDNNFSDTPLAK
EPDPCRNQQEDKIKPTRKQNIPQKRPRAFTLPKHRTMGKNNCTPKKQKAEGTGGGSVQRE
GHLSCPSTLPQSILPFQQYNQFVTSPDVTSYQFKTQTICPSVIRLSFPKAALPLYVLVPV
PPSPSAYELQVPYIFPEDSAVVPALMSSSPFGTLSDNTSKVMSPPCNYETAKSNVSTAVR
QSPATFEIPQIVKNYIKMAKAHMHQICEEMEPGLNLSSHFLDVKAIQREMFCSGKKYKSL
HKELVSMGDMDRQKNLIKLSQIFENSNGNKPKRYILLIGKAGMGKTTLIRKLCQDWARDS
IPQFDFVFLLNGAHLISSKKSHYSLQTLLLDVPTFAISPINIEEVYAQVLKAPKRVLIIF
DGFGDQDYEILFREKDFAALLEKDTKGKVFTVRKLYSAILQRVVLPGSILLISARPKGTA
YHLVQRLDSLLETSGFTPLNVETYFSRYFDDPNLRESVLKHLEKCSYLRHLCWNPGLCRL
VCLVLEHSAGSESLPRTLTELCHQVLCIKMKNNNWGCCTQAKAQAQITLQSSRQESKRAQ
VRKRARWSTKGKSQIPDEVLQTAQRKICEKNIISRLSSLAWEGVKANTSILPKEVRLCSK
LKTFGLRKGVFLIYQGSANQVCSLCESEGVEGEQETIESENAQRRNQQTTDFEENDDVLV
WADPFIQSYLAGLHLSMNRNVMNQNLFQKPPSLSGPKGRRRPEGELQELTRRFAFSIQFL
SRTELRRLHLDTNPNKQALISEHLKGLSLADLCPDQVLEACHYVFEASFSCGNGGSDSGK
ETLVTHLSANLPEFLTFRGIPLGPPDAYVVHKILERAENGGRGFSLDLEDTGIPISGLRS
LVGLGSCSTYRACIADVIALWEQLEQSGESRPLQHFVTKLKLHPLKVIQVSQIEHLGKLV
NIHIHRRLSCRPREPDPILDEGVPAVKELYKLELAIGPERGPQAIPRLWEFLPNLHDLQH
LDLEENKIGDQGAEQLADTFSSLCFLQILNLSQNCIGDNGVKKMVTALKDLPKLHCLILY
SNVISDEGASTLAAVLPHMASLTDLDVKYNKLSDVGAQCLGASLRQCKKMKTLRLWNQCI
PYGVFERLQQQDPRILWH
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacgtggatcaggacccaattttctgtcctgattatggagctttaccagatgat
ttatctgaattcatgaatgacagttacctggtgaagatacttgacacggatggcctcttt
agtgatgatcccactttgatttttgacgacaacaacttcagtgacactcccttggcaaag
gagccagacccatgcagaaaccagcaggaagacaaaattaagccaacaaggaaacaaaat
attcctcaaaaaaggcccagagcatttacactaccaaaacacaggacaatgggaaaaaat
aattgcacaccaaagaaacaaaaagctgaaggtactggcggaggatcagtgcagagggag
gggcatctatcctgtccctccacattgccgcaaagtatccttcctttccaacaatacaat
cagtttgtcacgagtccagacgtgacatcttatcagtttaagacccaaacaatctgtcct
tcagttatcagactttcattccccaaagctgctctaccattatacgtattggtacctgtg
cctccttcgccatcagcatacgaactccaagtgccatacattttcccagaggacagtgca
gtagtacctgccctaatgagttcatccccatttggaacattatcagacaacacaagcaaa
gtcatgtctccaccatgcaattatgagacggctaaaagtaacgtgtcaaccgcagttcga
cagtctcctgccacctttgagatacctcagattgtaaagaactacattaaaatggccaaa
gcccatatgcatcaaatctgtgaggagatggagccagggcttaatttgagctctcatttc
ttggatgtgaaagcgatccagagagagatgttttgctcaggaaaaaaatataagtccctg
cacaaagaactggtgtccatgggagatatggacaggcaaaaaaatttgattaaattgagt
cagatatttgagaattcgaatggaaacaaacccaaacgatatatacttctaattggcaaa
gctgggatgggaaaaaccacccttatcaggaagctatgtcaggactgggccagagactcc
atcccacagtttgactttgtattcttgttgaatggcgctcatctgatctcttcaaaaaaa
tcacactatagtcttcagaccctcctactcgacgtgcccacctttgccatttcccccatc
aatattgaggaagtgtacgctcaagtccttaaagcccccaaacgtgtactcatcattttt
gacggatttggtgatcaggactatgaaatcctatttcgagaaaaagacttcgcggccttg
ttggagaaagatactaaaggaaaggtctttacagttagaaagctatactctgccatcctc
caaagggtggtccttccaggatccattcttttgatttctgccagaccaaaaggcaccgcc
tatcatctagtgcagcgacttgacagccttttggaaactagtggatttacccctctaaat
gttgaaacgtatttctccaggtactttgatgaccctaatcttagagaatctgttttgaaa
cacttagaaaagtgcagttacctacgtcacctttgttggaatcctggactctgtcgactg
gtgtgcttagttttggaacactctgcaggatcagagagccttccaagaacattaaccgag
ctctgccatcaagtactttgcattaaaatgaaaaataacaattggggctgctgcactcag
gctaaagctcaagctcaaataacgctacagtcttcaaggcaagagtcaaagagagcgcaa
gtgagaaaacgagcaaggtggtcaacaaaggggaaaagtcaaataccagatgaggttctg
cagactgctcaaaggaaaatctgtgaaaaaaacattatttctcgtttgagctccctggcc
tgggaaggggtgaaggccaacacatccatccttcccaaagaagtacgtttatgttcaaaa
cttaagacattcgggctcaggaagggagtcttcctcatttatcaagggagcgcaaaccag
gtatgctccctatgtgagagtgagggagtagaaggagagcaagaaacgattgagagtgaa
aatgcacagaggcgaaatcaacaaactactgactttgaagaaaatgacgacgtcttggtg
tgggcagatcccttcattcagagctacctggcaggactccatttgtccatgaacagaaat
gttatgaaccagaacctttttcagaaacccccctccctttctggcccaaagggacgtagg
cgtccagaaggagagttacaagagctaactcggcgatttgctttcagcatccagttcctt
agcagaaccgagctacgcaggcttcatctagacacaaaccccaacaaacaggcgttaatc
tctgaacacctcaagggtctttcccttgctgacttgtgccctgatcaggtgttggaggcc
tgccactatgtttttgaagcaagtttctcatgtggcaatgggggcagtgacagtggaaaa
gaaacattggtcactcacctgtcagcaaacctacctgagttcctcacatttcgtggcatt
ccacttggtccaccagatgcatatgttgtgcacaagattctcgaaagagctgaaaacgga
ggcagaggtttttctttggatcttgaggatactggcattccaatttcaggactcaggtcc
ttggttggtcttggcagctgcagtacatacagggcatgcatagctgatgtaattgccctg
tgggagcagttagagcagagtggtgaaagtaggccccttcaacattttgtgaccaagttg
aagcttcaccccctgaaggttattcaagtgtctcaaatagaacatctgggaaagcttgtg
aacattcatatacacaggaggttgtcatgccgtcccagagaacctgatcccatcctcgat
gagggagttccagcagtcaaggagctatacaaactggagttagcgattggtccagaacgt
gggccccaagctatccccaggctttgggagtttctaccaaatttacatgacctccagcac
ctagatttggaggagaataagattggagaccaaggagctgagcaattggctgatacattc
tcctccctctgttttctgcagatactcaatctttcacagaattgtataggagacaatggg
gtcaaaaaaatggtgactgcactcaaggatttacccaaactgcactgtttgatcctctac
agtaacgtgatttctgatgaaggtgcctccactttagccgctgtcctccctcacatggca
tcactgactgacctagacgtgaagtataataagctatcagatgtcggtgcacaatgcttg
ggagccagccttaggcaatgcaagaaaatgaagactttaaggttgtggaatcaatgtatt
ccatatggtgtatttgaaaggctccaacagcaagacccaaggatactttggcattag
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integrated database retrieval system
