Sanguibacter biliveldensis: SANBI_000764
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Entry
SANBI_000764 CDS
T10642
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sbil Sanguibacter biliveldensis
Pathway
sbil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SANBI_000764 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbil03400
]
SANBI_000764 (mfd)
Enzymes [BR:
sbil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SANBI_000764 (mfd)
DNA repair and recombination proteins [BR:
sbil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SANBI_000764 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WPF83112
UniProt:
A0AAF0Z5B8
LinkDB
All DBs
Position
882532..886170
Genome browser
AA seq
1212 aa
AA seq
DB search
MNLTGIISALLEDQGARATVDRVRARGALDVIGPAGVRPPLLAAMAGARASEGLIPETGA
DGSRPLVVVTATGREADDLASALRCYLPYDDVAVLPAWETLPHERLSPRSDTVAKRLAVF
RRLAHPSADLGMTGPVRVLVMPVRALLQPVVEGLGDLEPVRLEVRDRADLAEVADRLSAA
AYARVDMVERRGEFAVRGGILDVFPPTEDHPLRVEFWGEEVEEIRWFAVADQRSLEIADH
GVWAPPCREMLLTDDVRDRASALVEQLPGAAEMLDKMGAGIAVEGMESLAPVLVDRMVPV
LDLVPDDALVVLSDPERVRRRAHDLVATTQEFLAAAWTSAAAGGSTPIDLSAASFDTIDD
ARDLSARRGLGWWTLSPFGLDNPEDDSDEDAPLQDPDADVLRIGAREVEAYHGDVSRALD
DVRGLQHAGWRLIMTTEGHGPAKRMVEQLSSADAPARLVGEITTDPEGGVVLVTPAPLGP
GFVAPDLKIAVFSESDMTGRAGSSTRDMRKMPSKRRNIVDPLQLRAGDFVVHEQHGVGKF
IELVQRTLGGGAAAATREYLVIEYASSRRGQPGDRLFCPTDQLDQVTKYTGGESPALNKM
GGSDWAKTKGRAKKAIKEIASELIRLYSARMATKGHAFGPDTPWQRELEDAFAYTETPDQ
LATIDEVKQDMEKTIPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH
YDTFAERYAGFPVVVKGLSRFQSDKEAKEVVDGLKDGTVDVVIGTHRLLSGSIRFKDLGL
VVVDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHP
VLTYVGAYDDKQITAAIRRELLREGQLFYVHNKVDSIDRTAARLKELVPEARIEVAHGKM
GEHQLERVIMDFWEKKFDVLVCTTIIETGLDISNANTLILERADMLGLSQLHQLRGRVGR
GRDRAYAYFLYPPERPLTETAHDRLATIAANTDLGSGMAVAMKDLEIRGAGNLLGGEQSG
HIAGVGFDLYVRMVGEAVAAFRGEAEEEAPEVTIELPVDAHLPHEYIAHERLRLEAYRKI
AAAQTDADLADIRAELVDRYGAVPEVVGNLFDVAAFRNHARAAGLSDVTAQGKYVRFAPV
DLAESAELRLKRLYPGTILKPAIRSVLVPFPTTGRIGGRPLRGAEILAWATELIDAVITG
DVSAAASVGTRR
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcacgggcatcatctccgctctcctcgaggaccagggcgcgcgcgccacggtc
gaccgtgtgcgggcccgcggcgcgctcgacgtgatcggcccggcgggcgtgcgcccgccg
ttgctggccgcgatggccggtgcccgtgcgagcgagggcctcatcccggagaccggcgcc
gacggctcgcgcccgctcgtggtcgtcacggcgacgggccgcgaggccgacgacctcgcc
tcggcgctgcgctgctacctgccctacgacgacgtcgcggtgctgcccgcgtgggagacg
ctcccgcacgagcgtctgtctccgcgctctgacaccgtcgccaagcgcctcgccgtgttc
cgccgcctcgcccacccctcggccgacctcggcatgacaggaccggtccgcgtcctcgtc
atgcccgtgcgtgccctgctccagcccgtcgtcgagggtctcggcgacctcgagcccgta
cgcctcgaggtccgtgaccgcgccgacctcgccgaggtcgccgaccgcctgtccgcagcc
gcctacgcacgcgtcgacatggtcgagcgccgcggcgagttcgccgtgcgcggcgggatc
ctcgacgtgttcccaccgaccgaggaccacccgctgcgtgtcgagttctggggcgaggag
gtcgaggagatccgctggttcgcggtcgccgaccagcgcagcctcgagatcgccgaccac
ggcgtctgggcgcctccctgccgcgagatgctgctcaccgacgacgtgcgcgaccgcgcc
tcggccctcgtcgagcagctccccggtgccgccgagatgctcgacaagatgggcgcgggc
atcgccgtcgagggcatggagtccctcgccccggtcctcgtcgaccgcatggtgccggtc
ctcgacctcgtccccgacgacgccctcgtcgtgctgagcgaccccgagcgggtccgacga
cgtgcgcacgacctcgtcgcgacgacccaagagttcctcgccgcggcctggacgtcggcc
gcggccggcgggtcgaccccgatcgacctcagcgccgcctccttcgacacgatcgacgac
gcccgtgacctctcggcccgccgcggcctcggctggtggaccctgagccccttcgggctc
gacaaccccgaggacgacagcgacgaggacgcacccctccaggaccctgacgccgacgtg
ctgcgcatcggtgcccgtgaggtcgaggcgtaccacggtgacgtctcgcgcgccctcgac
gacgtccgcgggctccagcacgccggctggcgactcatcatgacgaccgagggccacggc
ccggccaagcgcatggtcgagcagctgagcagcgccgacgcaccggcgcggctcgtcggt
gagatcaccacggaccccgagggcggggtggtcctcgtgaccccggcgccgctcggccca
gggttcgtcgcacccgacctcaagatcgccgtcttctccgagtcagacatgacaggccgc
gcagggtcctcgacccgagacatgcgcaagatgccgtcgaagcgccgcaacatcgtcgac
cccctccagctgcgggctggcgacttcgtggtgcacgagcagcacggtgtcgggaagttc
atcgagctcgtccagcgcaccctgggtggcggtgctgctgccgcgacccgtgagtacctc
gtcatcgagtacgcgagctcgcgccgcggccagcccggagaccggctcttctgcccgacg
gaccagctcgaccaggtgaccaagtacaccggtggtgagtccccggccctcaacaagatg
ggcggctcggactgggccaagacgaagggcagggcgaagaaggcgatcaaggagatcgcc
tccgagctcatccgtctctactcggcgcgcatggcgaccaagggccacgccttcgggccg
gacaccccgtggcagcgcgagctcgaggacgccttcgcgtacaccgagacccccgaccag
ctggcgaccatcgacgaggtcaagcaggacatggagaagacgatccccatggaccgtctg
gtctgcggcgacgtcggctacggcaagaccgagatcgcggtccgggcggccttcaaggca
gtccaggacggcaagcaggtcgcggtcctggtcccgaccaccctgctcgtccagcagcac
tacgacaccttcgccgagcgctacgcgggcttccccgtcgtggtcaagggcctctcgcgc
ttccagtccgacaaggaggcgaaggaggtcgtcgacgggctcaaggacggcacagtcgac
gtggtcatcggcacgcaccgcctgctctccgggtccatccgcttcaaggacctcggcctc
gtggtggtcgacgaggagcagcgcttcggggtcgagcacaaggagacgctcaagcagctg
cgcaccaacgtcgacgtcctcgccatgagcgcgaccccgatccccaggaccctcgagatg
gcggtcaccgggatccgggagatgtcgacgctcgcgacgccgcctgaggagcgccacccg
gtgctcacctacgtcggggcgtacgacgacaagcagatcaccgcggcgatccgccgtgag
ctgctccgcgagggccagctgttctacgtgcacaacaaggtcgactcgatcgaccggacg
gccgcgcgcctcaaagagctcgtgcccgaggcccgcatcgaggtggctcacggcaagatg
ggcgagcaccagctcgagcgcgtgatcatggacttctgggagaagaagttcgacgtgctc
gtctgcacgacgatcatcgagaccgggctcgacatctcgaacgccaacacgctgatcctc
gagcgcgccgacatgctcggtctctcccagctgcaccagctccgcgggcgcgtggggcgt
ggtcgggacagggcgtacgcgtacttcctctacccgcccgagcgtcccctgacggagact
gcgcacgaccgtctcgcgaccatcgcggccaacaccgacctcgggtcgggcatggccgtg
gccatgaaggacctcgagatccgcggcgcgggcaacctgctcggcggtgagcagtccggg
cacatcgccggggtcggcttcgacctctacgtgcggatggtcggggaggccgtcgcagcc
ttccgcggcgaggccgaggaggaggcgcccgaggtcaccatcgagctgcctgtcgacgcg
cacctgccgcacgagtacatcgcgcacgagcggctgcgcctcgaggcgtaccgcaagatc
gccgccgcgcagaccgacgccgacctcgcggacatccgggctgagctcgtcgacaggtac
ggcgcggtccccgaggtggtcggcaacctcttcgacgtggcggccttccgcaaccacgcg
cgggctgccgggctctccgacgtcacggcgcagggcaagtacgtgcgcttcgcgcccgtc
gacctcgccgagtctgctgagctgcgcctcaagcgtctgtaccccgggacgatcctcaag
ccggcgatccgctcggtcctcgtgcccttcccgaccaccggccgcatcggtgggcggccg
ctgcgcggggcggagatcctcgcctgggccacggagctcatcgacgccgtcatcacgggc
gacgtgtcggcagcagcgtcggtcgggacgcgccggtag
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