Sphingomonas bisphenolicum: SBA_ch1_00770
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Entry
SBA_ch1_00770 CDS
T08354
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sbin
Sphingomonas bisphenolicum
Pathway
sbin03030
DNA replication
sbin03410
Base excision repair
sbin03420
Nucleotide excision repair
sbin03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SBA_ch1_00770
03410 Base excision repair
SBA_ch1_00770
03420 Nucleotide excision repair
SBA_ch1_00770
03440 Homologous recombination
SBA_ch1_00770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbin03032
]
SBA_ch1_00770
03400 DNA repair and recombination proteins [BR:
sbin03400
]
SBA_ch1_00770
Enzymes [BR:
sbin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SBA_ch1_00770
DNA replication proteins [BR:
sbin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SBA_ch1_00770
DNA repair and recombination proteins [BR:
sbin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SBA_ch1_00770
NER (nucleotide excision repair)
GGR (global genome repair) factors
SBA_ch1_00770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
HHH_5
DprA_N
HAMP_N3
HHH
HHH_2
Motif
Other DBs
NCBI-ProteinID:
BBF67877
LinkDB
All DBs
Position
1:73793..76573
Genome browser
AA seq
926 aa
AA seq
DB search
MTQNHLYLVDGSGYIFRAYHQLPPLTNQHGQPVGAVYGYTTMLWKLAEELGKAEGPTHLA
VVLDKGSHTFRNDMYDQYKANRPPAPEDLVPQFPMIRDATRAFSLPCIEEAGFEADDIIA
TYTRAAVAAGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVMGKFGVQPEQLGDV
LALMGDSVDNVPGVPGIGPKTASKLITEYGDLESVLTAAPAMKKSKMQENLIAHADMARL
SRRLVALHDSMDLPEPLEDLTLKGIPKEPLQQFLSHHGFKTLLNRLGAPAAAVAVASVAA
TTAAPAAPATVEHPPIDCALYETVTTVAQLEAWIAEAQALGVVAVDTETDSLDSMESGLV
GISLSTGPGRACYIPLAHRSADDMFGEVPPQIPLDAAIRLLRPLLTDDAVLKVGHNIKYD
LNVLARVGLEVTPIDDSMVMSFDLDAGKSLGGHGMDEAASVHLQHTCISFKEVTGTGKKA
ISFAHVPLDKATAYAAEDAEVTWRLWHTLSQRLAAERVTRVYQLVDRPLIPVVAGMERHG
IKVDREQLSRLSGTFSQSMAGLEAEIYELAGHPFTIGSPQQLGVVLFDEMGLKGGKKGKS
GTYSTDVTVLEKLKAEGSAICGLVLEWRQLSKLKSTYTDALQQQINADTGRVHTSYSLTG
AQTGRLSSTDPNLQNIPIRTEIGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPAL
KEAFEQGEDIHNRTAQELFGEVNRDTRGRAKTINFAILYGISRWGLAGRLEISADEAQDM
ISKYYERFPGISVYINETLEKARANGFTETLFGRKTWFPRITAPIQHERQGAERAAINAP
IQGTSADIIKRAMVRMGPALEAAGLNRVRMLLQVHDELVFELPQGDVEAASAVIRDVMES
AAEPIVSLSVPLGVEIGTGPSWGAAH
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgacccagaatcacctctatctcgtcgatggcagcggctatatcttccgcgcctatcac
cagcttcccccgctcaccaaccagcatggccagccggtcggcgctgtctatggctatacc
accatgctctggaagctggccgaggaactgggcaaggcggaagggccgacccatctggcg
gtggtgctggacaagggttcgcacaccttccgcaacgacatgtacgaccagtataaggcg
aaccgaccgcccgcgccggaagatctggtcccgcaatttccgatgatccgcgacgcgacc
cgcgccttctccctcccctgtatcgaggaagccgggttcgaggcggacgacatcatcgcc
acctataccagagcggcggtcgcggccggctggcacgtcaccatcgtcagctccgacaag
gatctgatgcagttgatccagcccggcgtcgacatgtacgacacgatgaagaatgagcgg
cgcggcgccgactatgtcatgggcaagttcggcgtgcagcccgaacaactgggcgacgtg
ctggcgctgatgggtgacagcgtcgacaatgtccccggcgtgccgggcatcggccccaag
accgcatcgaagctcatcaccgaatatggcgacctggaaagcgtgctgaccgccgcgccc
gccatgaagaagtcgaagatgcaggaaaacctcatcgcccatgccgatatggcgcggctg
tcgcggcggctggtggcgctgcacgacagcatggacctccccgaaccgctcgaagacctg
acgctcaagggcatccccaaggaaccgctccagcaatttctgtcccaccacggcttcaag
acgctgctcaatcgcctcggcgcgcccgccgccgccgtcgcagtagccagcgtcgccgcc
acgaccgcagcccccgccgccccagccaccgtcgaacatcccccgatcgactgcgccctc
tacgaaaccgtcaccacggtcgcgcaactggaagcctggatcgccgaagcgcaggcgctg
ggcgtcgttgcggtcgacaccgaaaccgacagcctcgacagcatggaatcgggcctggtc
ggcatcagcctgtccaccgggccgggccgcgcctgctacatcccgctcgcccaccgctcc
gccgacgacatgttcggcgaggtgccgccgcaaatcccgctcgacgccgcgatccgcctg
ctccgcccgctgctcaccgacgacgccgtgctcaaggtcggccacaatatcaaatatgac
ctcaacgtcctcgcccgcgtcgggctggaggtgacgccgatcgacgattcgatggtgatg
agcttcgacctcgacgccggcaagtcgctgggcggccacggcatggacgaagcggccagc
gtgcatctccagcacacatgcatcagcttcaaggaggtgaccggcaccggcaagaaggcg
atcagtttcgcccatgtcccgctggacaaggcgaccgcctacgccgccgaggacgccgaa
gtcacctggcggctgtggcacacattgtcgcagcgcctggcggccgagcgcgtcacccgc
gtctatcaactggtcgaccggccgctgatccccgtcgtcgcaggcatggagcggcacggc
atcaaggtcgatcgcgagcagctctcccgcctgtccggcaccttctcccaatcgatggcg
gggctggaagccgaaatctacgaactggccggccaccccttcaccatcggatcgccccag
cagcttggcgtcgtcctgttcgacgaaatggggctgaagggcggcaagaagggcaaaagc
ggcacctattccaccgacgtcaccgtgctggaaaaattgaaggccgaaggctcggcgatc
tgcgggctggtgctggaatggcgccagctctccaagctcaaatccacctataccgacgcc
ctgcaacagcagatcaatgccgatacgggccgcgtccataccagctactcgctgaccggc
gcgcagaccggccgcctctcctcgaccgaccccaacctccagaatatcccgatccgcacc
gaaatcggccgccagatccgccacgccttcgtcgccgaacccggcaatgtcatcctcgcc
gccgactatagccagatcgagctgcgcctcgccgcgcacatggccgacgtgcccgcgctc
aaggaggcattcgaacagggcgaggacatccacaaccgcaccgcccaagaattgttcgga
gaggtcaatcgcgacacccgcggccgcgccaagacgatcaacttcgccattctctacggc
atctcgcgctgggggctggcgggccggctggaaatcagcgcggacgaagcgcaggacatg
atctccaaatattatgagcgcttccccggcatcagcgtctatatcaacgaaacgctggaa
aaggcgcgcgccaacggcttcaccgaaacgctgttcggccgcaagacctggttcccgcgc
atcaccgcgccgatccagcacgagcgccagggcgccgaacgcgccgcgatcaacgccccg
atccagggcaccagcgccgacatcatcaagcgcgcgatggtccgcatgggtccggcgctg
gaagcggccgggctgaaccgggtgcggatgctgctccaggtccatgacgaactggtgttc
gaattgccgcaaggcgatgtggaagccgcgagcgcggtcatccgggacgtgatggaaagc
gcggcggagccgatcgtcagcctgtccgtcccgctgggcgtagagatcggcaccgggccg
agttggggcgcggcgcattga
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