Sphingomonas bisphenolicum: SBA_ch1_02910
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Entry
SBA_ch1_02910 CDS
T08354
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sbin
Sphingomonas bisphenolicum
Brite
KEGG Orthology (KO) [BR:
sbin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbin03032
]
SBA_ch1_02910
03400 DNA repair and recombination proteins [BR:
sbin03400
]
SBA_ch1_02910
Enzymes [BR:
sbin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SBA_ch1_02910
DNA replication proteins [BR:
sbin03032
]
Prokaryotic type
DNA Topoisomerases
SBA_ch1_02910
DNA repair and recombination proteins [BR:
sbin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SBA_ch1_02910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
BBF68091
LinkDB
All DBs
Position
1:304258..305283
Genome browser
AA seq
341 aa
AA seq
DB search
MGEKDKMAHSSIVHADDSIPGITRRALKHGWAYYDADGTRIADRDEIDRLNAIALPPAYV
DCWYCPSPWGHVQAIGYDDRGRKQYRYHPDFRAAREAEKYAGCPDFGRSLPKLRERLEAD
LSRRGLRKDRTLAAVIRLLDLAKLRVGNEHYATTNKSFGATTLRRRHMDLSGKSLTLRYR
AKSGKEQLLTVTDTRLLRFVRQVQDLPGQHLFQYLDEDGDARPITSGDVNAYIADAMGGP
FTAKHFRTWGASTIAFETLAAGHVSQKELLAPVAQALGNTPAISRKSYVHPALLALCKDG
QDEWRAGLRLPRRTRYLSRGERGLIAFLDGIADCAPLAAAA
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgggggagaaggataagatggcccatagctccatcgtccatgcggacgactccattccc
ggcattacgcgacgcgcgctcaagcacggatgggcctattatgacgccgacggcacgcgc
atcgccgaccgcgacgaaatcgaccggctgaacgcgatcgcgctgccgccggcctatgtc
gactgctggtactgcccctcaccctggggtcatgtccaggcgatcggctatgacgatcgc
ggccgcaaacaatatcgctatcacccggacttccgcgccgcgcgggaggcggagaaatat
gccggctgccccgatttcggccgctccctgcccaaattgcgcgaacggctggaggccgac
ctgtcgcgtcgcggcctgcgcaaggaccgtacgctggccgccgtgatccgcctgctcgac
ctcgccaagctgcgcgtcggcaacgaacattatgccaccaccaacaagagcttcggcgcg
accacgctgcgccgccgccacatggaccttagcggcaagtcgctgacgctgcgctaccgc
gccaagtcgggcaaggagcagttgctgaccgtcaccgacacccgcctgctccgcttcgtg
cggcaggtgcaggatttgcccggccagcatctgttccaatatctggatgaggatggcgac
gcccggccgatcacgtcgggcgacgtcaacgcctatatcgccgacgccatgggcggcccc
ttcaccgccaagcatttccgcacctggggcgcctccaccatcgcgttcgaaacgctggcg
gcgggccatgtctcgcagaaggagctgctcgccccggtggcgcaggcgctgggcaacacg
ccggcgatcagccgcaaaagctacgtccaccccgccctgctcgcattgtgcaaggacgga
caggatgaatggcgtgcggggcttcgcttgccgcgccgaacgcgctatctgtcgcgcggg
gagcgcggcctgattgcgtttctcgacgggatcgcggattgcgccccgctggcagcggcg
gcctga
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