Sphingomonas bisphenolicum: SBA_ch1_11720
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Entry
SBA_ch1_11720 CDS
T08354
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sbin
Sphingomonas bisphenolicum
Pathway
sbin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SBA_ch1_11720 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbin03019
]
SBA_ch1_11720 (recQ)
03400 DNA repair and recombination proteins [BR:
sbin03400
]
SBA_ch1_11720 (recQ)
Enzymes [BR:
sbin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SBA_ch1_11720 (recQ)
Messenger RNA biogenesis [BR:
sbin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SBA_ch1_11720 (recQ)
DNA repair and recombination proteins [BR:
sbin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SBA_ch1_11720 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
BBF68972
LinkDB
All DBs
Position
1:1185986..1187758
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AA seq
590 aa
AA seq
DB search
MRPDIPTLLHDIFGFTAFRGVQEAVVGRVMAGQPTLAIMPTGAGKSLCYQLPSAALDGCC
VVVSPLIALMHDQLRAANAVGLRAASLTSVDADWRETQDRLRNGDLDLLYVAPERASQEP
FRNLLRAAKVALFAIDEAHCVSEWGHDFRPDYRLLRPLLDEFPDVPRLALTATADAHTRE
DILVQLGIPRDGLIISGFDRPNIRYVVHPRDGLTRQLADLVAANPGPGIVYAQTRAATEK
LAETLGKGGRAVRAYHAGLDPAVRARNQAAFIASEDMVMVATVAFGMGIDKPDVRFVAHA
GLPKSIEGYYQESGRAGRDGEPAVAHLFWGAEDFARARMRIAELEQSRQQGERTRIAALG
ALVETATCRRAILLRHFGENPPATCGNCDNCLSPPASVDATQVARKYLSAVYRTGQSFGA
GHIEAVLTGAPNDKVRERGHDKISVHGIVSGEDVALLRPVSRALLVRDALETTEHGGLML
GPNARPILRGEEEVRILVPPKRERRGRNARNGAEANPVGDPLFDALRACRRELAQEAGVP
PYVIFHDSTLREMAEQRPSSIRAMSHISGIGQKKLDAWGDAFLSAIRPYL
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgcggcccgacattcccacgcttctccacgacatattcggtttcaccgcctttcgcggg
gtgcaagaagcggtagtgggccgcgtcatggcgggccagccgacgctcgccatcatgccg
acgggcgcgggcaagtcgctctgctaccagcttccgtccgccgcgctcgatggctgctgc
gtcgtcgtctcgccgctgatcgcgctgatgcacgaccagttgcgcgccgccaacgccgtg
ggcctgcgcgccgccagcctgaccagcgtggacgccgactggcgcgaaacgcaggatcgg
ctgcgcaacggcgatctcgacctgctctatgtcgcccccgaacgcgccagccaggaaccg
ttccgcaacctgctccgcgccgcgaaggtcgcgctcttcgcgatcgacgaagcccattgc
gtctccgaatggggccatgatttccgcccagactatcgcctgctccgcccgttgctggac
gaatttcctgacgtcccgcgcctcgcgctgaccgccacggcggacgcccacacgcgcgag
gacattctcgtccagctcggcattccgcgcgacgggctcatcatctccggcttcgaccgg
cccaatatccgctacgtcgtccacccgcgcgacggcctgacgcgccagttggccgatctc
gtcgccgccaatcccggtcccggcatcgtctatgcccagacccgcgccgcgaccgagaaa
ctcgccgaaacgctggggaagggcggccgcgccgtgcgcgcttatcatgccgggctggac
ccggcggtgcgcgcccgcaaccaggcggccttcatcgccagcgaggatatggtgatggtc
gccaccgtcgccttcggcatgggcatcgacaagcccgacgtgcgcttcgtcgcccatgcc
ggcctgcccaaatcgatcgagggctattatcaggaatcgggccgcgccggccgcgacggc
gaaccggcggtcgcgcatcttttctggggcgcggaggatttcgcccgcgcccggatgcgc
attgccgaactggagcagagtcgccagcagggggaacgcacccgcatcgccgcactcggc
gcactggtagaaaccgccacctgccgtcgcgcgatcctgctccgccacttcggcgaaaat
ccgcccgccacctgcggcaattgcgacaattgcctctcacccccggccagcgtggacgcg
acgcaagtcgcccgcaaatatctctccgccgtctatcgcaccggccagagcttcggcgcg
ggccatatcgaagcggtgctgaccggcgcccccaacgacaaggtgcgcgaacgcggccat
gacaagatttccgtccatggcatcgtgtcaggcgaagacgtcgcgttgctgcgtccagtg
tcgcgcgccttgctggtgcgcgacgcgctggagacaaccgaacatggcggcctgatgctc
ggccccaacgcccgccccatcctgcgcggggaagaagaggtgcgcatcctcgtgccgccc
aagcgcgaacggcgcggccgcaacgcccgcaatggggcggaggccaacccggtcggcgat
ccgctgttcgacgccttgcgcgcctgccgccgcgaactggcgcaggaggcgggcgtgccg
ccctatgttatcttccacgattcgaccctgcgcgaaatggccgagcagcgcccatccagc
atccgcgcaatgagtcacatcagcggcatcggccagaagaagctcgacgcctggggcgat
gccttcctcagcgcgatccggccctatctctga
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