Sphingomonas bisphenolicum: SBA_ch1_13820
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Entry
SBA_ch1_13820 CDS
T08354
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sbin
Sphingomonas bisphenolicum
Pathway
sbin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SBA_ch1_13820 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbin03021
]
SBA_ch1_13820 (rpoC)
03400 DNA repair and recombination proteins [BR:
sbin03400
]
SBA_ch1_13820 (rpoC)
Enzymes [BR:
sbin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SBA_ch1_13820 (rpoC)
Transcription machinery [BR:
sbin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SBA_ch1_13820 (rpoC)
DNA repair and recombination proteins [BR:
sbin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SBA_ch1_13820 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BBF69182
UniProt:
A0ABN5WIQ9
LinkDB
All DBs
Position
1:complement(1379952..1384238)
Genome browser
AA seq
1428 aa
AA seq
DB search
MNELTNFANPVQKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKFQLLNEDELLDAQDEYGEDAFSAG
IGAEAVKQMLMDLDLEGEKQALLDELAVTKSELKPKKIIKRLKVVESFLESGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMEREGEPGEGMLLSDMQEVHQALFT
QSVTLHSKVISRVPQTDEAGNAYLKRYETTPGRMLLGECLPKSHKVPFDVVNRLLTKKDV
GDVIDEVYRHTGQKDTVLFADAIMSLGFRHAFQAGISFGKDDMVIPDSKEGTVAETKALV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMDEIKAQPKDPQTGRLAQINSIYM
MAHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCTIVEEDCGTEKALEMKAIVQGGSVIASLGERILGRTT
AQDIVDSKDGSIVIPIGTLLDEPMIAKIEAIGTQAVKIRSPLICESRMGVCGKCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAANFNETSNLESMADGTIELRDMPT
ITDKHGRRLSLARNGEIAIIDSEGRERETHRLPYGATILFADGDAVKKGERFAEWDPFTM
PVITEKPGIVKYVDLIDSKTLTEQTDEATGIAQRVVTEHRGAARTKEDLRPRLTLLDDQS
GEAARYMLAVGATLSVDDGAQVQAGDVLARVSREAAKTRDITGGLPRVAELFEARKPKDN
AIIAKVSGRVQFLKDYKAKRKIAINPEDGGEPVEYLIPKSKVIDVQEGDFVKRGDNLIGG
SPDPHDILEVLGIEPLAEYLVAEIQEVYRLQGVKINDKHIETIVRQMLQKVEIIESGDTT
LLVGEQIDREEMDEINSKLAAGFAPAAGKPVLLGITKASLQTRSFISAASFQETTRVLTE
AAVQGKKDTLVGLKENVIVGRLIPAGTGAGMNRLRVAASSRDAALRAALRASSQVDLIAP
KSAAAERAAELAQGPEAAIGNDPLAAVEGETHGTDADAGDYLLKSDGE
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaactgaccaacttcgcgaacccggtccagaagccggaaaccttcgaccagatc
cagatcggccttgcctcgcccgaacgcatccggtcctggtccttcggcgagatcaagaag
ccggaaaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggattatgaatgcctgtgcggcaagtataagcgcatgaagtac
aagggcatcgtctgcgaaaagtgcggtgtcgaagtcacggtgagcaaggtgcgccgcgag
cgcatgggccatatcgagctggccgccccggtcgcgcacatctggttcctcaagtcgctg
ccctcgcgcatcggcctgctgctcgacatgcagctcaagcagcttgagcgcgtcctctat
ttcgaatcctatatcgtcaccgagccgggcctgaccccgctcgaaaagttccagcttctg
aacgaagacgaactgctcgacgcgcaggacgaatatggcgaagacgccttctccgccggc
atcggcgcggaagcggtcaagcagatgctgatggatctcgacctggaaggcgagaagcag
gcgctgctggacgagctggccgtcaccaagtcggaactgaagcccaagaagatcatcaag
cgcctgaaggtcgtcgagagcttcctggaatcgggcaaccgccccgaatggatgatcctg
gacgtcgtccccgtgattccgcccgaactgcgcccgcttgtgccgctggacggcggccgc
ttcgcgacgtcggatctgaacgacctgtatcgccgcgtcatcaaccgcaacaaccgcctg
aagcggctgatggaactgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgttg
caggaagccgtcgacgccctgttcgacaatggccgtcgtggtcgcgtcatcaccggcgcg
aacaagcgtccgctcaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggtcgttcggtcatcgtgaccggtcct
gagctgaagctgcatcagtgcggcctgcccaagaagatggcgctcgaactgttcaagccc
ttcatctacgcccgcctcgacgccaagggtctgtccatgaccctgaagcaggccaagaag
tgggtcgagaaggagcgcaaggaagtctgggatatcctggacgaagtgatccgcgaacat
ccggtcatgctgaaccgcgcgccgacgctgcaccgtctgggcatccaggcgttcgaaccc
gtgctgatcgaaggcaaggcgatccagcttcacccgctggtctgctcggccttcaacgcc
gacttcgacggtgaccagatggccgtccacgttccgctgagccttgaggcccagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccgtcgcaggacatggtgctgggcatctattatctgtcgatggaacgcgaaggc
gagccgggcgaaggcatgttgctgtccgacatgcaggaggtccatcaggccctcttcacc
cagtcggtgacgctgcattccaaggtcatcagtcgcgtgccgcagaccgacgaggcgggc
aacgcctatctcaagcgctacgagactacgccgggccggatgctgctgggcgaatgcctg
cccaagtcgcacaaggtgccgttcgacgtcgtcaaccgcctgctgaccaagaaggatgtg
ggcgacgtgatcgacgaggtctatcgccacaccggccagaaggacacggtgctgttcgcc
gacgccatcatgagcctgggcttccgccacgcgttccaggccggcatctcgttcggcaag
gacgacatggtgatcccggactcgaaggaaggcaccgtcgccgaaaccaaggcgctggtg
gccgattacgagcagcaatatcaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccgttgcggcgaccaggtcgcgaacgccatgatggacgagatc
aaggcccagcccaaggacccgcagaccggccgcctcgcgcagatcaactcgatctacatg
atggcgcattccggtgcgcgtggttcgcaggcccagatgaagcagctcgccggcatgcgt
ggcctgatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaag
gaaggcctgaccgttcttgaatatttcaactccacccacggcgcgcgcaagggcctggcg
gatacggcgctcaagacggcgaactcgggttacctgacccgccgtctggtcgacgtgtcg
caggactgcaccatcgtcgaggaagattgcggcaccgaaaaggcgctggagatgaaggcg
atcgtccagggcggttccgtcatcgcttcgctcggcgagcgcatcctgggccgcaccacg
gcgcaggacatcgtcgacagcaaggatggcagcatcgtcatcccgatcggcaccctgctg
gacgaaccgatgatcgccaagatcgaagcgatcggcacccaggccgtcaagatccgctca
cccctgatctgcgaaagccggatgggcgtgtgcggcaaatgctacggccgtgaccttgcc
cgcggtacgccggtgaatatcggcgaagcggtcggcgtcatcgcggcgcagtccatcggc
gagccgggcacgcagctcaccatgcgtaccttccacatcggcggcgcggcgaacttcaac
gaaacgtcgaacctggaatcgatggcggacggcacgatcgaactgcgtgacatgccgacc
atcaccgacaagcatggccgtcgcctgtcgctcgcccgcaacggcgagatcgcaatcatc
gacagcgaaggccgcgagcgcgaaacccatcgcctgccttatggcgccaccatcctgttt
gccgatggcgacgccgtgaagaagggcgagcggttcgccgagtgggatccgttcaccatg
ccggtgatcacggaaaagccgggtatcgtgaaatatgtcgatctgatcgacagcaagacg
ctgaccgaacagaccgacgaagccaccggtatcgcccagcgcgtcgtgacggaacatcgt
ggtgccgcccgcaccaaggaagaccttcgcccgcgcctgaccctgctggacgatcagtcc
ggcgaagccgcccgctatatgctggcagtgggtgcgacgctgtcggtcgacgatggcgcc
caggtgcaggccggtgacgtgctggcgcgtgtcagccgcgaagcggccaagacccgcgac
atcaccggtggtctgccgcgcgtcgccgagctgttcgaagcccgcaagcccaaggacaat
gcgatcattgccaaggtgtcgggccgcgtccagttcctgaaggattacaaggcgaagcgt
aagatcgccatcaatcccgaagatggcggcgagccggtcgaatatctgatccccaagagc
aaggtgatcgacgttcaggaaggcgacttcgtgaagcgcggcgacaacctgatcggcggt
tcgcccgatccgcacgacattctggaagtgctcggcatcgagccgctggccgaatatctg
gtcgccgaaatccaggaagtctatcgcttgcagggcgtgaagatcaacgacaagcacatc
gaaacgatcgttcgtcagatgctgcaaaaggtcgagatcatcgagtccggcgacaccacc
ctgctggtgggcgagcagatcgaccgcgaggaaatggacgagatcaacagcaagctggca
gcgggcttcgcgcccgcggcgggcaagccggtgctgctcggcatcaccaaggcgtcgctg
cagacccgttcgttcatctcggcggcgtccttccaggaaaccacccgcgtcctcacggaa
gcggcggtccagggcaagaaggacacgctggtcggcctgaaggagaacgtcatcgtcggc
cgcctgatcccggcaggtaccggtgcgggcatgaaccgcctgcgcgtcgccgcctcgtcg
cgtgacgcggcgttgcgggccgcgctgcgcgcttcgagccaggtcgatctgatcgccccc
aagtcggccgcagccgaacgtgcggccgaactggcgcagggtccggaagcagcgatcggc
aacgatccgctggccgctgtcgaaggggaaacccatggcaccgatgcggacgcgggcgat
tacctgctgaagagcgacggcgaataa
DBGET
integrated database retrieval system
