Sphingomonas bisphenolicum: SBA_ch1_24880
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Entry
SBA_ch1_24880 CDS
T08354
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sbin
Sphingomonas bisphenolicum
Brite
KEGG Orthology (KO) [BR:
sbin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbin03032
]
SBA_ch1_24880 (topA)
03400 DNA repair and recombination proteins [BR:
sbin03400
]
SBA_ch1_24880 (topA)
Enzymes [BR:
sbin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SBA_ch1_24880 (topA)
DNA replication proteins [BR:
sbin03032
]
Prokaryotic type
DNA Topoisomerases
SBA_ch1_24880 (topA)
DNA repair and recombination proteins [BR:
sbin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SBA_ch1_24880 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
DUF7343
Poly_export
Motif
Other DBs
NCBI-ProteinID:
BBF70288
LinkDB
All DBs
Position
1:complement(2529838..2532429)
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AA seq
863 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGGDFHVLASYGHIRDLPAKDGSVDPDDGFAMSWENYGDKGK
QLKAIADASKKATRLILATDPDREGEAISWHVQEVLRAKKALPSQVDRVTFNAITKAAVL
DAMAKPRALDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVERE
REIESFTPQEYWSVAAEMEQGGQGFTARLVRWKGEKIDRLTIGKEGDAMAAKADVEAGRF
TVDKVETKPLTRNPPAPFTTSTLQQEAARKLGFSASHTMRIAQQLYEDGAITYMRTDGVQ
MDGSAISAARKAIAERYDGGYLPEKPRQYQTKAKNAQEAHEAIRPTEFGRDKAGSGDHAR
LYDLIFKRALASQMASARLERTTIDMVDGSGSHTLRATGQVVIFPGFLALYEEGRDDSDD
DDSKLLPRMSEGDAPAKKKVTAEQHFTQPPPRYSEASLVKRLEELGIGRPSTYASTLQVL
KDRDYVRIEKNRFFAEESGRLVTAFLERFFERYVSYDFTAGLEDELDDISGGRAQWQEVL
EAFWKDFKPKTAEVMEQKPSDITAALDKFLEPMLFPPRADGSNPRACPLCADGQLSLRGG
RFGAFIACSNYPECKYTRKFGQPGGKDGEDTGPEVLGQHPETGQDIVKKSGRFGPYIEMG
EGKEAKRGSIPKDLPDGELTLDWGLKLLSLPREVGLHPETGLPIVANIGRFGPYLLHDGK
YGRLSSTSEIFEVGMNSAVVKLAEAATRGGRSSGGREPLKVLGAHPRTELEIKLMEGRYG
AYVTDGTTNATLPKTVDKDQLTLEEAAQLIDARAAAAPAKKGKKKAAPKKAAAKKPVVKK
DGDSAKKPAAKKAPAKKKVAAAE
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttgtcatcgtagaatcgccggccaaggcgaagaccatcgagaaatatctgggc
ggcgatttccatgtcctcgccagctatggccatatccgcgacttgcccgccaaggacggg
tcggtggacccggacgacggctttgccatgtcgtgggaaaattatggcgacaagggcaag
cagctcaaggcgatcgccgacgcgtccaagaaggcgacgcgcctcatcctggcgactgac
cctgatcgcgaaggggaagcgatcagctggcatgtgcaggaggtgctgcgcgccaagaag
gcgctgccgagccaagtggaccgggtgacgttcaacgcgatcaccaaggcggcagtgctg
gacgcgatggccaagccgcgcgctttggacgaggatctgatcgacgcttaccgcgcgcgc
cgggcgctcgattatctggtcggctttacgctgtcgccggtgttgtggcgcaagctgccc
ggcgcgaagtcggcggggcgcgtgcagtcggtcgcgctgcggctggtggtggagcgcgag
cgggagatcgaaagcttcacgccccaagaatattggtcggtcgcggccgagatggaacag
ggcgggcagggctttaccgcgcgcctcgtgcgctggaagggcgagaagatcgaccgcctg
accatcggcaaggaaggcgacgccatggccgccaaggccgatgtggaggccgggcgcttc
accgtcgacaaggtggagacgaagccgctcacccgcaatccgcctgcgccgttcacgaca
tcgaccttgcagcaggaagccgcgcgcaagctgggcttttcggccagccatacgatgcgg
atcgcgcagcagctctacgaagatggcgcgatcacctatatgcgtaccgacggcgtgcag
atggacggcagcgccatttccgccgcgcgcaaggcgatcgcggagcgctatgacgggggc
tatctgcccgaaaagccgcgccagtatcagaccaaggcgaagaatgcgcaggaagcgcat
gaagccattcgtccgaccgagttcggccgcgacaaggcggggtcgggcgatcatgcgcgc
ctttacgacctgatcttcaagcgtgcgctggcgagccagatggcgtcggcgcggctggag
cggaccaccatcgacatggtggacggcagcggcagccatacgctgcgcgcgacggggcag
gtggtgatcttcccaggcttcctggcgctctatgaagaaggccgcgacgacagcgacgat
gatgattcaaagctgctgccgcgcatgagcgagggcgatgcccctgccaagaagaaagtc
acggcagaacagcatttcacccagccgccgccgcgctattccgaagcgtcgctggtgaag
cgtctggaggaactggggatcgggcggccgtccacctatgcgtccacgttgcaggtgctc
aaggaccgcgactatgtacggatcgagaagaaccgcttcttcgccgaggagagcgggcgg
ctggtgacggcgttcctggagcgcttcttcgaacgctatgtgtcctatgacttcacggcg
ggactggaagacgagctggacgatatttccggcggccgcgcccagtggcaggaagtgctg
gaagccttctggaaggacttcaagcccaagaccgccgaggtgatggagcagaaaccgtcg
gacatcacggcggcgctcgacaagtttctggaaccgatgctgttccctccgcgcgcggac
ggcagcaatccgcgcgcctgcccgctgtgcgccgatgggcagttgtcgctgcggggcggt
cggttcggggcgttcatcgcctgctccaattacccggagtgcaaatatacgcgcaaattc
gggcagccgggcggcaaggatggtgaggatacggggccggaggttctgggccagcatccc
gagaccgggcaggacatcgtcaagaagtccggtcgctttggtccctatatcgagatgggc
gagggcaaggaggccaagcgcgggtcgatccccaaggatctgcccgatggcgaactgacg
ctggactggggcctcaagctgctgagcctgccgcgcgaggtgggtctgcatcccgaaacc
ggtttgccgatcgtggcgaatatcgggcggttcggtccctatctgttgcatgacggcaaa
tatgggcggctgtcatcgacctcggagattttcgaggtcgggatgaacagcgccgtcgtg
aagctggccgaggcggcgacccgcggcgggcggtcgagcggcgggcgggagccgctgaag
gtgctgggcgcgcatccgcgcacggagctggagatcaagctgatggagggccgctacggc
gcctatgtcaccgacggtacgaccaatgcgaccctgcccaagacggtggacaaggaccag
ttgacgctggaagaagcggcgcagttgatcgacgcgcgcgcggctgcggcaccggccaag
aagggcaagaagaaggcggcgcccaagaaggcggcggccaagaaacctgtggtcaagaag
gacggcgacagcgcgaagaagccggccgccaagaaggcccccgcaaagaagaaggtggct
gcggcggaataa
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