Sphingomonas bisphenolicum: SBA_ch1_25030
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Entry
SBA_ch1_25030 CDS
T08354
Symbol
TrmA
Name
(GenBank) RNA methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sbin
Sphingomonas bisphenolicum
Brite
KEGG Orthology (KO) [BR:
sbin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sbin03009
]
SBA_ch1_25030 (TrmA)
Enzymes [BR:
sbin01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
SBA_ch1_25030 (TrmA)
Ribosome biogenesis [BR:
sbin03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SBA_ch1_25030 (TrmA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
PSD5
Motif
Other DBs
NCBI-ProteinID:
BBF70303
UniProt:
A0ABM7G5K3
LinkDB
All DBs
Position
1:complement(2546974..2548179)
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AA seq
401 aa
AA seq
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MTDTDLDIIIRIAAKGDGITADGRHFPLTAPGDRIGPGGFVIAGPHHVDPACTHFPACGG
CQIQQLDEVSYADFVTARVTGALAGQGVVPVTVLPPHISPPMTRRRAALRAARAGKRVTI
GFAEGGSHRLIDLEMCAVLDPRLFALVAPLRGLLATILPDKRAAHVKMSLVDQGVDLLLE
GVKVEGLAADEALGDFARAHGLARLTIDEGDGAQTRWEPEAATISFGGVPVGFPPFAFLQ
ATPDGEAALVGAVRDALPETGAIADLFAGLGTFALALGDGRPVYAGEGARDAILSLKLAA
GRAQRRLAADHRDLFRRPLTPEELNRFAAVILDPPRAGAREQVLQLAASAVPVVAYVSCN
PASFARDAAHLTAAGYRLDSVKPVGQFRWTTHVELVGIFRR
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
gtgacagataccgatctagacatcatcatccgcatcgccgccaagggcgatggcatcacg
gccgacggccgccatttcccgctgaccgcaccgggcgaccggatcggccccggtgggttc
gtcatcgccggaccgcatcatgtcgatccggcctgcactcatttcccggcttgtggcggg
tgccagatccagcaactggacgaggtaagctatgcagatttcgtgacggcgcgggtgacc
ggcgcgttggcggggcagggcgtggtgcctgttaccgtactgccgccccatatctccccg
ccgatgacgcggcggcgcgcggcgttgcgggccgcgcgggcgggcaagcgcgtgaccatc
ggctttgccgaggggggcagtcaccggctgatcgacctggagatgtgtgcggtgctcgat
ccgcggctgttcgctctggtggcgccgctgcgggggctgctggcgacgatcctgcccgat
aaacgggctgcgcatgtgaagatgtcgctggtcgaccagggcgtcgatctgctgctggag
ggggtaaaggtcgaggggctggcggcggacgaggcgctgggcgactttgcgcgggcgcac
gggctggcgcggctgaccatcgatgagggcgatggcgcgcaaacgcgctgggagccggag
gcggcgacgatcagcttcggcggcgtgccggtgggttttccgcccttcgccttcctgcag
gcgacgcccgatggcgaggcggcgctggtcggcgcggtgcgcgatgcgctgccggagacg
ggggcgatcgccgatctgttcgccggccttggcacctttgcgctggcgctgggcgacggg
cgtccggtttatgccggcgagggcgcgcgggatgcgatcctttcgctcaagctcgcggcc
gggcgggcgcaacgacggttggcggcagatcatcgcgacctgttccggcggccgctgacc
cccgaagagttgaaccgctttgccgcagtgatcctggatccgccgcgagcgggcgcgcgc
gagcaggtgttgcaactggcggcgtcggccgtgccggtcgtcgcctatgtgtcctgcaat
ccggcaagcttcgcgcgcgatgcggcgcatctgacggcggccggctatcggctcgacagt
gtcaagccggtgggccagttccgctggacgacccatgtcgaactggtcggcatcttccgc
agataa
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