Sphingomonas bisphenolicum: SBA_ch1_30460
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Entry
SBA_ch1_30460 CDS
T08354
Symbol
mfd_1
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sbin
Sphingomonas bisphenolicum
Pathway
sbin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SBA_ch1_30460 (mfd_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbin03400
]
SBA_ch1_30460 (mfd_1)
Enzymes [BR:
sbin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SBA_ch1_30460 (mfd_1)
DNA repair and recombination proteins [BR:
sbin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SBA_ch1_30460 (mfd_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_30
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BBF70846
LinkDB
All DBs
Position
1:3097340..3100813
Genome browser
AA seq
1157 aa
AA seq
DB search
MTDLQKILKAKAPLTLSGVPAGFQPWLLADIARAAGAAGGRAVFIASDEQLMRAVADTAH
YFAPEIEIIEIPAWDCLPYDRASPSLRAASARLAGLHALQAPPKGPQLVLTTLAAMTQRT
LTPFRVRQLVAKLAPKERIAIQTLAAMLQANGYVRTDTVHDRGEFAIRGGIVDLFPGGEE
QPLRLDFFGDEIETVRRFDAADQRTIENVDGFTLLPASEALLDEDTIKRFRSRYRETFGA
TATGDPLYQAVSDGRRLAGMEHWLPLFEEKLVPLADHLGDDAVLIRDPGVAGAAENRFEA
IRDYHANRVQAKSADPGAYRPLKPDSLYLDATEWDAAVATRRMHHTTPFHEPESATVLDF
AVDGPRDFAPERAQNSNIYEAVSKHIASLRRTQKKIVIASYSLGARERLSGLLADHDVPR
LATADGWQEALGVAANGSVTLTVLPLDHGFTAPDVAVLTEQDMLGDRLVRRAKRKKSADA
FLQELATLSPGDLVVHMDHGIGRYEGLTQIPVSKAAHDCVALTYAGGDKLYVPVENLEVL
SRYGSENEGVSLDKLGGEAWQRRKAKMKERIREIAGELLKTAAERALRAATVAEPDQAGY
PAFVDRFPYQETDDQDRAINDVVEDLGSGKPMDRLVCGDVGFGKTEVALRAAFVAAMAGM
QVVVICPTTLLARQHHMQFEERFRGFPVNIGRLSRLVPDKEAKATKAGLADGTIDIVVGT
HALLAKGLEFKRLGLVIVDEEQRFGVTHKERLKSLKTDVHVLTLTATPIPRTLQMAMSGL
RELSVIQTPPVDRLAVRTYIMPWDGVVIREALLREHYRGGQSFFVVPRIADLTEIEEYLR
NEVPEIKAIVAHGQMSATEVEERMSAFYDKRYDVLLSTTIVESGLDIPSANTLIIHRADR
FGLAQLYQLRGRVGRSKTRAYAYMTTPANRIITETAEKRLKVLSDLDTLGAGFQLASHDL
DIRGAGNLVGDEQSGHIKEVGFELYQSMLEEAIMDAKAGGVGIEKRSDSFSPQISVDAPI
LIPDDYVPDLDLRMGLYRRINEIEDRQGLESFAAELIDRFGKLPLPTQNLLKIIEIKQNC
MTANIAKIDMGAKGALVSFFEDRFPNPAGLVAYVQRLDGVARLRPDSKIVVNRAWPDPQA
RLNGALQLSKGLAKAAG
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatctccagaaaatcctgaaggcgaaggcgccgctcaccctgtccggcgtgccc
gcaggcttccagccctggctgctggccgacatcgcccgcgcggcgggggccgctggcggc
cgtgccgtcttcatcgcgtccgacgaacagttgatgcgtgcggtcgcagacacggcgcat
tatttcgcgccagagatcgagatcatcgaaatcccggcctgggactgcctgccctacgat
cgcgccagcccctcgctgcgcgccgcctccgcgcgcctggcgggactccatgcgctgcaa
gccccgcccaaaggcccccaactggtcctcaccacgctggcggccatgacccagcgcacg
ctcacccccttccgcgtgcgccagctcgtcgcgaaactcgcgcccaaggaacggatcgcg
atccagacgctggccgccatgctccaggccaacggctatgtccgtaccgacacggtccac
gaccggggcgaattcgccattcgcggcggcatcgtcgacctgttccccggcggcgaggaa
caaccgctccgcctcgatttcttcggcgacgagatcgagacggtccgccgattcgacgcg
gccgaccagcgcacgatcgaaaatgtcgatggcttcaccctcctccccgcctccgaagcg
ctgctggacgaagacacgatcaagcggttccgcagccgctaccgcgaaacgttcggcgcg
accgcgaccggcgacccgctctatcaggcggtcagcgacggccgccgcctggcgggcatg
gaacattggctccccctgttcgaggaaaagctcgtccccctcgccgaccatctgggcgat
gacgccgtcctgatccgcgatcccggcgtcgcgggcgcggcggaaaaccggttcgaggcg
atccgcgactatcatgccaaccgcgtccaggcgaagtcggccgatcctggcgcctaccgt
ccgctcaaacccgactcgctctatctcgacgccaccgaatgggacgccgccgtcgccacg
cggcggatgcaccacaccacgcccttccacgaaccggaaagtgcaaccgtcctcgacttc
gccgtcgacggcccccgtgatttcgcccccgaacgcgcgcagaacagcaacatctacgaa
gcggtcagcaagcatatcgccagcctgcgccggacccaaaaaaagattgtcatcgccagc
tattcgctcggcgcacgcgaacgcctgtccggcctgctcgccgaccatgacgtcccccgc
ctcgccaccgccgacggctggcaagaggcgctgggcgtcgccgccaatggcagcgtgacg
ctcaccgtcctgcccctcgaccacggcttcaccgcacccgacgttgccgtcctcaccgaa
caggacatgctcggcgaccgcctggtccgtcgcgccaagcgcaagaaaagcgccgacgcc
ttcctacaggaactggccaccctctcgcccggcgacctcgtcgtccacatggatcacggc
atcggccgctatgaagggctgacgcagattccggtcagcaaggccgcccatgattgcgtc
gccctgacctatgctggtggcgacaaactctacgttccggttgaaaatctcgaagttctc
tcccgctacggcagcgagaatgaaggcgtcagcctcgacaagctgggcggcgaagcctgg
cagcggcgcaaggcgaagatgaaggagcgcatccgcgaaatcgcgggcgaactcctgaaa
accgccgccgagcgcgccctgcgcgccgccaccgtcgccgaaccggatcaggccggatac
cccgccttcgtagatcgcttcccctatcaggagacggacgatcaggaccgcgcgatcaac
gacgtggtggaggatctgggatcgggcaagcccatggaccgccttgtctgcggcgacgtc
ggcttcggcaagaccgaggtcgcgctccgcgcggccttcgtcgcggccatggccggaatg
caggtcgtggtcatctgcccgactaccctgctcgcgcgccagcatcatatgcagttcgag
gagcggttccgcggcttcccggtcaatatcggccgcctctcccgcctcgtcccggacaag
gaggcgaaggcgaccaaggcgggcctggccgacggcacgatcgacatcgtcgtgggcacc
cacgcgctgctcgccaaggggttggagttcaagcggctcggcctcgtcatcgtggacgag
gaacagcggttcggcgtcacccataaggaacggctgaagtccctcaagaccgacgtccat
gtcctgaccctcactgcaacgccgatcccccgcacgctgcaaatggcgatgtcgggcttg
cgcgaactatcggtcatccagaccccgccggtcgatcgcctcgcggtgcgcacctacatc
atgccctgggacggcgtcgtcatccgcgaagcgctgctacgtgaacattatcgcggcgga
cagagcttcttcgtcgtcccccgcatcgccgacctgaccgagatcgaggagtatctccgc
aacgaggtgccggagatcaaggccatcgtcgcccatggccagatgagcgcaaccgaagtg
gaggagcgcatgtccgccttctacgacaagcgctacgatgtgctgctgtccaccaccatc
gtggaatccggcctggacatccccagcgccaacacgctcatcatccatcgtgccgaccgc
ttcggccttgcccagctctaccaactccgcggccgcgtcggccgatccaagacgcgcgcc
tatgcctatatgacgacacccgccaaccgtatcatcacggaaacggcggaaaagcggctc
aaggttctctcggacctcgacacgctgggcgctggcttccagcttgcctcccacgatctc
gacattcgcggcgcgggcaacctggtcggtgacgaacagtcgggccatatcaaggaagtc
ggcttcgaactctaccagtcgatgctggaagaggcgatcatggacgccaaagccggcggc
gtcggcatcgaaaaacgcagcgacagcttctccccccagatcagcgtcgacgcgcccatc
ctcatccccgacgattatgtgccggacctcgatctgcgcatgggcctctatcgccgtatc
aacgaaatcgaggaccgtcagggcctcgaatccttcgccgccgaactgatcgaccgtttc
ggcaagctcccgctgcccacgcaaaacctgctcaagatcatagagatcaagcagaattgc
atgacggcgaacatcgccaaaatcgacatgggtgccaagggcgcgctggtcagcttcttc
gaagaccgcttccccaatcccgcgggtctggtcgcctacgtccagcgcctggatggcgtc
gcccgcctgcgccccgacagcaagatcgtcgtcaatcgcgcctggcccgatccgcaggcg
cgcctgaacggcgctttgcaactgtcgaaggggctggccaaggcggcggggtaa
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