Sphingomonas bisphenolicum: SBA_ch1_34530
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Entry
SBA_ch1_34530 CDS
T08354
Symbol
deaD
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sbin
Sphingomonas bisphenolicum
Pathway
sbin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SBA_ch1_34530 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbin03019
]
SBA_ch1_34530 (deaD)
03009 Ribosome biogenesis [BR:
sbin03009
]
SBA_ch1_34530 (deaD)
Enzymes [BR:
sbin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SBA_ch1_34530 (deaD)
Messenger RNA biogenesis [BR:
sbin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SBA_ch1_34530 (deaD)
Ribosome biogenesis [BR:
sbin03009
]
Prokaryotic type
rRNA helicases
SBA_ch1_34530 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBF71253
LinkDB
All DBs
Position
1:3500466..3502295
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AA seq
609 aa
AA seq
DB search
MLIPSEEGGSLYPMENNNMTFDTLHPLLAQALTTKGYEALTPVQAEVTQEEAHGRDLIVS
AQTGSGKTVAFGLAMASELLGDADRLPPPAWPLALVIAPTRELALQVSRELEWLYAGARA
RIATCVGGMDAAKERRALAQGAHIVVGTPGRLRDHLERGALDLSALKTAVLDEADEMLDM
GFREDLEGILDATPDGRRTLLFSATMPKPIVQLARRYQKDAFQITSAAGERGHGDISYQA
MTVAPADIENAVVNLLRYHEAETAILFCATRDNVRHLHASLTERGFAAVALSGEHSQNER
NHALQALRDKRARVCVATDVAARGIDLPSLTLVVHVELPRDAETMQHRSGRTGRAGKKGT
AVLIVPYPRRRRVESMLRGAKIPVEWTTAPSKEAIAQQDAERLRAQLLAPVELEESDWAL
GAELLEAKSAKEIAAMLVKSARAAMPAPEELLDASEAPARRDGPRPGFEDTQWFRMDIGR
RQNADPRWILPLICRRGHVSRGDIGAIRITTNETMFEIPKAIAAKFIAAVKRSGEAGDEG
ADVAFEPVDGAPREEARENRRQLRPSNDARPNRSGPPRGGPGGGRPHSPRPFKGAGAGGP
RKGPPRPRG
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgttgattccgtcggaagaaggcgggtcgctttatccgatggaaaacaataatatgaca
ttcgacactctccaccccctcctcgcccaggcgctgaccaccaagggctatgaagcgctg
accccggtccaggccgaagtcacgcaggaggaagcgcatggccgcgacctgatcgtgtcg
gcgcagaccggttcgggcaagaccgtcgcctttggcctggccatggcgagcgagctgctc
ggagacgccgatcgcctgcccccgcccgcctggccgctggcgctggtgatcgcgccgacg
cgcgaactggcgttgcaggtcagccgcgagctggaatggctctatgccggcgcccgcgct
cgcatcgccacatgcgtcggcggcatggacgccgccaaggaacgacgcgccctggcgcag
ggcgcgcatatcgtggtcggcacgccgggccgcctgcgggaccatctggagcgcggcgcg
ctcgacctgtcggcgctcaagaccgccgtcttggacgaagccgacgagatgctcgacatg
ggtttccgcgaggatctggaaggcattctcgacgccacgcccgatggccgccgcaccctg
ctgttttcggcgaccatgcccaagccgatcgtgcagctcgcgcggcgctaccagaaggat
gcgttccagatcacgtcggccgccggtgagcgcggccatggcgacatcagctatcaggcg
atgaccgtggcccctgccgacatcgaaaatgccgtggtgaacttgctgcgctatcatgag
gcggagacggcgatcctgttttgcgccacgcgcgacaatgtccgccatctgcacgccagc
ctgaccgaacgtggcttcgccgccgtggcgttgtcgggcgaacatagccagaatgagcgc
aaccatgcgttgcaggcgctgcgcgacaagcgggcgcgggtgtgcgtggcgaccgacgtc
gcggcgcgcggcatcgacctgccctcgctgacgctggtcgtccatgtcgaactgccgcga
gatgcggaaacgatgcagcaccggtcgggccgcaccgggcgagcgggcaagaagggcacc
gccgtgctgatcgtgccttatccccgccgccgccgcgtcgaatcgatgctgcgcggggcc
aagatcccggtcgaatggacgacggcgcccagcaaggaagcgatcgcccagcaggatgcc
gagcgactgcgcgcgcagttgctggcgccggtggaactggaagagtccgactgggcgctg
ggcgccgagcttctggaagccaagagcgccaaggaaatcgccgcgatgctggtgaagagc
gcgcgtgccgccatgcccgcgcccgaagagctgctggacgccagcgaagcgccggcgcgc
cgcgacgggccgcgtccgggcttcgaggacacccagtggttccgcatggacatcggccgg
cggcagaatgccgatccgcgctggatcctgccgctgatctgccgtcgcggccatgtgtcg
cgcggcgatatcggcgcgatccgcatcaccaccaacgagacaatgttcgaaatccccaag
gcgatcgcagccaagttcatcgccgcggtcaagcggtctggcgaagcgggtgacgaaggc
gcggatgtcgccttcgagcccgtcgatggcgccccgcgcgaggaagcgcgggagaatcgc
cgccagttgcggccgtccaacgacgcacggcccaaccgcagcggtccgccgcgtggcggt
ccgggtggcgggcgtccgcacagcccgcgcccgttcaagggcgccggcgccggtggcccg
cgcaaggggccgccccgcccgcgcggttga
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