Shewanella bicestrii: CF168_01030
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Entry
CF168_01030 CDS
T05197
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sbj
Shewanella bicestrii
Pathway
sbj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CF168_01030 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbj03021
]
CF168_01030 (rpoC)
03400 DNA repair and recombination proteins [BR:
sbj03400
]
CF168_01030 (rpoC)
Enzymes [BR:
sbj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CF168_01030 (rpoC)
Transcription machinery [BR:
sbj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CF168_01030 (rpoC)
DNA repair and recombination proteins [BR:
sbj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CF168_01030 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ASK67545
UniProt:
A0A220UHH2
LinkDB
All DBs
Position
228246..232463
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM
GAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYATG
AAELHARVKVRITETVIGDNGERSEQRRIVDTTVGRALLSQILPAGLSFDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDDMVIPAEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVAVDVLYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAACYG
RDLARGHLINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL
HNAKYVTNTDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEASVEAGDIIANW
DPHTHPIITEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGSAGKEMRPMIRL
VGADGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGEQYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCVITSAGDSEFLEGEQVEVSRVKIANRDLIEQGKVPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTRNDARAKKDEPV
VVNKITASEAEQNLADLLNLAGSQD
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttaacggcatc
aaaattggtctggcatcgcctgatctgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccattaactaccgtaccttcaagcctgagcgtgaaggtctgttctgtgcgcgt
atctttggcccggtcaaagattacgaatgtttgtgcggtaagtacaagcgtttgaagcac
cgtggtgtgatctgtgaaaagtgtggtgtagaagttacccagactaaagtacgtcgtgag
cgtatgggtcacattgaactggctagcccagttgcccacatttggttcttgaaatcactg
ccgtcccgtatcggtttaatgctggacatgacgctgcgtgatatcgagcgcgtactgtat
tttgaatctttcgtcgtgatcgagcctggcatgaccagccttgaacgtggccaaatgctg
acagaagaaaactatctggacgcattagaagaatacggtgacgaattcgaagctaagatg
ggtgctgaagcggtattagaactgctgcgcgcaatcgatctcgaaaaagaaatcgaacaa
atgcgtgaagagctgccatcaatcaactctgagactcgtcgcaagaaagtgaccaagcgt
cttaagttgatggaagcgttccacacgtctggcaacaagccagagtggatgatcttaaaa
gtactgcctgtgttaccacctgacttacgtccgctggtaccgctcgatggcggccgcttc
gcgacttcagatctgaacgatctgtaccgccgcgtgatcaaccgtaacaaccgtttgaag
cgtctgttagatttagctgcgccggacatcatcgtacgcaacgaaaagcgtatgttacaa
gagtctgttgatgcgctattagataacggtcgtcgtggtcgtgctattactggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaaacaaggtcgtttccgtcag
aacttgttaggtaagcgtgttgactactctggtcgttcggtaattaccgtaggtcctact
ttacgtctgcaccaatgtggtcttcctaaaaagatggcactggaactgttcaagccattc
atctatggcaagctggaaggtcgtggcttagcgacaaccatcaaagcggctaagaagatg
gtagagcgtgaagtggcggaagtttgggacgttctggatgaagtgatccgcgaacatcca
gtgatgcttaaccgtgcaccaacactgcacagactgggtatccaagcgttcgaacctgta
ctgattgaaggtaaagcaatccagttacacccactcgtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggcggtacacgtaccgttaacactggaagcgcagcttgaagct
cgtgccctgatgatgtctaccaacaacatcctgtcaccagcgaacggcgagcctgtaatc
acgccgtctcaagacgtggtattaggtctgtactacaccagccgtgagcgtatcaacggc
cgtggtgaaggtatgtactttatgtctgttgctgaagttgaaaaagcttacgcaactggc
gctgctgaactgcatgcccgcgtgaaagtgcgtatcactgaaaccgttatcggtgacaat
ggtgagcgcagcgaacaacgtcgtatcgtagatactactgttggccgtgctctgctgtca
caaattctgccagcaggtttgtcatttgatctggttaaccagaacatgggcaaaaagcag
atttctaaactattgaacacttgttaccgccaattaggtctgaaagataccgtaatcttc
gctgaccaactgatgtacacaggtttccgttacgccactatctctggtgcatctgtcggt
atcgacgacatggtgatcccagctgagaagtacaccttagttgctgacgctgaagcagaa
gtgctcgaaattcaagagcagttccaatcaggtctggttaccgcgggtgagcgttacaac
aaagtaatcgacatctgggcaagtgcgaacgaaaaagtttctaaagcgatgatggaaaac
ctgtcaactgagacagtgattaaccgtgatggcgttgaagagaaacaagcttcgttcaac
agcatttacatgatggccgactcgggcgctcgtggtagtgccgcacagatccgtcagtta
gcgggtatgcgtggtctgatggcgaaaccagacggttcgatcatcgaaaccccaatcgta
gcgaacttccgtgaaggtctgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtctagccgataccgcattgaagacagcgaactcgggttacctgactcgtcgtctg
gttgacgttgctcaagacttagtggtcatcgaagacgattgtggtactcacgaaggtcta
acaatgaagccgctgatcgaaggtggtgacgttgttgagccattgcgtgaacgcgtactg
ggtcgtgtggttgctgttgatgttctgtacccaggtacagaagatgtgcttgcaccacgt
aacactctgctcgacgaagcatggtgtgacaagttagaagaacactcaatcgacgaagtg
attgtacgttcagtaattacctgtgataccgacttcggtgtgtgtgcggcatgttatggc
cgtgacttagcccgtggtcacctgattaaccacggcgaagccatcggtgttgtcgcggca
caatcaatcggtgaaccaggtacacagttaacgatgcgtacgttccacatcggtggtgcg
gcatcgagagcgtctgcagaaaacaacgttcaagtgaagaactctggttcgttgaaactg
cacaacgctaagtacgtgactaacactgacggcaagctggttatcgtttctcgttcttct
gaactggcgatcatcgacgaattaggtcgtgagaaagagcgttataaagtgccttacggt
actgtgctcgagaagttagaagaagcatcagttgaagcgggcgatatcatcgctaactgg
gatccacatactcacccaatcatcactgaagtggcgggtagtattaagttcgttgacatg
atcgacggcgtgaccatgactcgtcaaacagacgaactgactggtctgtcatcaatcgtg
atcctcgacgtgggtcaacgtggttcagcgggtaaagaaatgcgcccaatgatccgtctg
gttggtgccgacggtagcgacctgatgatcccaggtactgaagtacctgcacaatacttc
ttaccaggtagtgcgatcgttaaccttgacgacaacgcgcaaatcgccgtgggtgacgcg
ttagcacgtattccacaagaatcgtctaaaacacgcgacatcacgggtggtctaccacgc
gttgctgacctgttcgaagcccgtaagccaaaagagccagcaattctggcggaaatctct
ggtaccatctcgtttggtaaagagaccaaaggcaagcgtcgtctggtgatcacaccagcg
gatggcggtgaacagtacgaagagatgatcccgaaatggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttattgctgacggtccagaagcggcgcacgacatt
ctgcgtctacgtggcatccacaacgtagcaaactacattgtgaatgaagtgcaagacgta
taccgtctacaaggcgtgaagatcaacgataaacatatcgaagtgatcatccgtcaaatg
ctgcgtaagtgcgtgatcacctctgcgggtgacagtgagttcttagaaggcgaacaagta
gaagtgtctcgcgtgaagatcgctaaccgcgacctgatcgaacaaggcaaagtgcctgcg
accttcgaacgtgaactgctgggtattaccaaagcgtctctggcaacagaatcgttcatc
tctgcagcatcgttccaagaaacaactcgcgtactgacagaagctgccgtaggtggtaag
tctgataacttacgtggtctgaaagaaaacgtaatcgttggccgtctgatcccagccggt
actggttatgcttatcacaagacccgtaacgatgcccgtgctaagaaagacgagccagtt
gtagtgaataagatcactgcaagtgaagcagaacaaaaccttgcagacctcctaaacctg
gctggtagccaagattaa
DBGET
integrated database retrieval system
