Shewanella bicestrii: CF168_02810
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Entry
CF168_02810 CDS
T05197
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sbj
Shewanella bicestrii
Pathway
sbj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CF168_02810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbj03019
]
CF168_02810
03009 Ribosome biogenesis [BR:
sbj03009
]
CF168_02810
Enzymes [BR:
sbj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CF168_02810
Messenger RNA biogenesis [BR:
sbj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CF168_02810
Ribosome biogenesis [BR:
sbj03009
]
Prokaryotic type
rRNA helicases
CF168_02810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
HD_4
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ASK67873
UniProt:
A0A220UJJ2
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All DBs
Position
complement(612554..614413)
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AA seq
619 aa
AA seq
DB search
MSSSERTFRELGLSENLLRALDELGYENPTPIQSASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNKVTSQAVPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNA
LKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQR
QLALFSATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLE
VENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIA
TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE
RATNSRISPMKVPSPETVAERRLSRLGEQLAQTMTQDLDFMREAVAQLCQQLEVDTDLLA
AALLHQVQQERPLQLPAIQERTRDERSERGAERGERGERRSRESRPMPASLGSAEALKDN
PDLKMCRYVIDVGRDNGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTVDLPDGMPKEV
LQHLKKVRVCGKPLNIREAGDQVFVDSGRGARSDRRPRGDRPMGERKPRSASGDKPFADR
KPRSDKPAGERRPRKPREE
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccagtgaaagaactttccgtgaactcggcttgtccgagaatttgttgcgtgct
cttgacgagctaggttacgaaaacccaacgccaatccaatcagccagtatcgacccatta
atggctggcaaagatattttaggtcaggcacaaacaggtacaggtaaaactggcgccttc
gccctgcccctgctcaacaaagtgaccagccaagctgttccacaaattttagtattagcg
ccaacccgcgaattagcggtgcaagtagcagaagctttcagcagctacgcgaaatttatg
aaaggtttccatgtactgccaatctatggcggtcagagcatgcatcagcaattaaacgcc
ctgaagcgtggcccacaggttatcgtgggtacaccgggccgtgttatggaccatatgcgc
cgtggcaccttaaagctggaaaccctgcaagcgctggtactcgacgaagccgacgaaatg
ttaaaaatgggctttatcgacgatatcgaatggattctggagcacacaccagagcagcgc
caactggcactgttctcggccactatgccagaacaaatcaagcgtgttgctaacaagcac
ttaaaagatgcgactaacatcagcatcgcggcgagccacaccactgttgactctatcgag
caacgtttcgtgcaagtgtctcagcacaacaagttagaagccttagtacgcgtattagaa
gttgaaaataccgaaggtatcatcatcttcgttcgtacccgtaactcatgcgttgaatta
gcagaaaaactcgaagcccgcggctacgcttcatcaccactgcacggtgatatgaaccag
caagcccgtgagcgtgcggttgaacagctgaaaagcggcaagctagacattctgatcgcg
accgacgttgcggcccgtggtctggacgttgagcgtatcggccacgtagtaaactacgat
atcccttacgatactgaagcttacgtacaccgtatcggtcgtactggtcgtgctggccgt
acgggtatggcgattctgttcgtcaccagccgtgaaatgcgtatgctgcgcaccatcgag
cgcgcaactaacagccgtatttcaccaatgaaagtgccaagcccagagacagttgcagag
cgtcgtctgtctcgcttaggtgagcagttagcgcaaaccatgacacaagatctggacttt
atgcgcgaagccgttgcccagttatgtcaacaactggaagtggataccgatctgctggcc
gcagccctgctgcaccaagttcagcaagagcgcccactgcaattaccagcgattcaagaa
cgtactcgcgatgagcgcagcgaacgtggtgctgaacgtggcgagcgcggtgaacgtcgt
agccgtgaatcacgtccaatgccagcaagccttggtagcgctgaagcgttaaaagacaac
ccagatctgaagatgtgccgttatgttatcgacgtgggtcgtgacaatggcgtgggtgtg
ggcaacatcgttggcgctattgcaaacgaagcgaacatcgacagccgttacatcggtgcc
atccagttatacgatgcagtaactaccgttgacctgccagacggcatgccaaaagaagtg
ctgcagcacctgaagaaagtgcgcgtatgtggcaagccactgaacatccgtgaagctggc
gatcaggtattcgtagactcaggccgtggcgcacgtagcgaccgtcgtccacgtggtgac
cgtccaatgggcgagcgtaaaccacgttcagcctctggcgacaagccatttgctgatcgc
aaaccacgttcagacaagccagcaggcgagcgtagaccacgtaaaccacgcgaagagtaa
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