Shewanella bicestrii: CF168_09580
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Entry
CF168_09580 CDS
T05197
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sbj
Shewanella bicestrii
Pathway
sbj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CF168_09580 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbj03400
]
CF168_09580 (recB)
Enzymes [BR:
sbj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CF168_09580 (recB)
DNA repair and recombination proteins [BR:
sbj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CF168_09580 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ASK69105
UniProt:
A0A220ULX7
LinkDB
All DBs
Position
complement(2178579..2182358)
Genome browser
AA seq
1259 aa
AA seq
DB search
MTKISPALPLDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSEPLNCEQILVV
TFTNAATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLALKS
LDEAAIFTIHGFCQRILADLAFESSLLFESDFTLDDSEFLHHAVRDFWREACYPLPEYLA
QIIASEFGDPDGLVKQLRALLGASEAKPLQPVQPFSHLAESLSQSVQRFKLAWPRGRDAL
LELLHSLPLNGQRFGKASDNYPKLAEMFDQLDNFLAFGHGLPPLKVLEALSLSELKLNKG
GVIPSASEAPLLDHMEQLATLINAIKPAFLYSAKQGISERFAKQKQQKNVLTPDDLLTTL
AAAMQANPDTLPKAVASRFPVALIDEFQDTDPLQFAIFSGIYQTRLGLETQGSATAEPKP
RTDSKLSLLMIGDPKQAIYAFRGADIYTYIEARRQTQAHYFLDTNYRSSRNLVAGVNHLF
AQHSDPFISQSIPFDPVKTPASAAAKQLVEQAPNSAALRLKLLSEGEAGLNKASARQTLA
EDTAAEITRLLTQAANGQCSTPKGPLIAKDIAILVRDRNEAAVMKTALSKRQIGAVFLSR
DSVFETVEAREMALVLRALASPKDERALRSALATALLGYRAEQIHAFNQDEEQRQRLLEQ
FFELHQIWQKRGIMPALLSLANATQMVARLLHSPASTSIDQAEQDAAAHLEASNGERRLT
DFRHLAELLQQKATEIDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKG
LEYPVCFVPFVSLARDNRRRPTPMLYHRTNADGAQELVWDLEGTDEGWEQAKQETLAEDL
RLLYVALTRPVYLCYLYIANHSRMLKAGLKSQLHETAIGYLLGITDTDCDFSRLQHAAKA
LVAGLEASQPAISIEVVADDIAANKLHTGGSDSQTLSARKVSRQYRTPWRVGSYSGLVKN
APHAKATPGADDEVNAVLGTDTTNSSIDPLWQEADPQQAQPLLNRFSFERGANAGSFMHL
VLELIDFTQAQIDLPRELPKAMLQYGIAPEWQPVLEDWYLEVLQAPLALMAQDNQLINPE
LCLAALAPQHTLVEMEFYLPLNRLKDTELNQLLGQFGYDTELQFDELQGMLKGFIDLTFE
YQGKFYIADYKSNHLGDNIQAYHHSALKQAISDHRYDLQYILYSLALHRYLAMRLPNYDY
DTHIGGCYYLFLRGMSVQYPGFGIYYDKPPKALILALDALFQHSLETSTVNQQDTGAMA
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atgactaagatatcacccgctttgccgttagatccgctcaccctaccatttggcggcagt
cgcttaatcgaggccagtgcgggcacgggaaaaacctataccatttcaggtctgtatctc
agattactgcttggggatggcttaagcgaaccgctcaattgtgaacaaattctggtcgtg
acctttaccaatgccgccaccgaggagctgagggacaggattcgccgccgcattcaggta
gcctttaagtgtttcttagggcttgagattaacgatccttttgtgcaggcgctgtacgat
aagaccccagaagccgagcgcgctatcgccctgagacgcttcgacttggcgctcaaatcc
ctcgacgaagcggcgatttttaccattcacggtttttgccagcgaattttggccgatctc
gccttcgaatcatcattgttgttcgagtcggatttcaccttagatgacagcgagttttta
caccatgcggtgcgggatttttggcgtgaggcctgctatccgctgcctgagtatttagcc
caaattattgccagcgaatttggcgatcccgacggattagtcaagcagctgagagccttg
ctcggtgccagtgaggccaaaccgcttcaacccgtgcagccattttcgcatttggctgaa
tccttaagccagagtgtgcagcgctttaaactcgcctggccgcgtggccgcgacgcgctg
ttagagcttttacatagcctaccgcttaacggtcaacgttttggtaaagcgagcgacaat
taccccaaattggcggaaatgttcgatcaactggacaacttcttagcctttggccacggc
ttgccgccgcttaaagtgctcgaggctctgtcgttatccgagcttaagttgaataaaggc
ggcgtgatcccaagcgcgagcgaggcgccgctgcttgaccatatggagcagttagccacg
ctgattaacgcgattaaacccgcatttctctatagcgccaaacaagggatcagcgagcgc
tttgccaagcaaaaacagcagaaaaatgtgctgacacccgatgacctgctaaccaccttg
gcagcggcgatgcaggccaatccagacactttacctaaggctgtggcgagtcgcttcccc
gtggccttaatcgatgagttccaagatacggatcctctgcaatttgcaattttctcaggg
atttatcaaacccgtttggggcttgaaactcaaggttcggcgacggctgaacctaagcct
cgcacggatagcaaattaagcctgctgatgattggcgacccaaaacaagcgatttatgct
ttccgcggcgccgatatttacacttatatcgaggcgcgcagacagacccaggcgcactat
ttcctcgatactaactatcgctcgagtcgcaatctggtggccggggtgaatcatttattt
gcccagcattcggatccttttatcagccaatcgattcccttcgatccagtcaaaacgcct
gccagtgcggcggcaaaacaactcgttgagcaagcgcccaatagtgccgcgctgcggtta
aaactcttaagtgaaggcgaagctgggctcaataaggccagtgcgcggcaaaccttggcc
gaagataccgccgccgaaatcacccgtttactgacgcaggccgccaatggccaatgcagc
acgcccaaagggccattaattgccaaagatatcgccatcttagtgcgcgatagaaacgaa
gcggccgtgatgaaaaccgcgctcagcaagcgccagattggcgccgtctttttaagccgc
gacagcgtatttgaaaccgtcgaagcgcgggaaatggcactcgttctgcgcgccttggcc
agccccaaggacgagcgagccctgcgtagcgcccttgcgaccgccctgcttggttatcgc
gccgagcaaatccatgcctttaaccaagatgaagagcagcgccaaaggctgctagagcag
ttttttgagctgcaccagatctggcaaaaacgcggcattatgccggcgctgctcagcctc
gccaatgccacccagatggttgcgcggctgctgcattctcccgcttcgacaagcattgac
caagcggagcaagatgctgccgctcatcttgaggcgagcaatggcgaacgtcggctcacg
gattttcgccacttagctgagctgttgcagcaaaaggcgacagaaattgatgggatcagt
gccctcctcaactggtatgagcaacaactgattgataacacagggacagatgagcagcag
ctacgccttgaaagcgagcaaaacttagtgcaaatcgtcaccatccataagagtaagggg
ctggaatacccagtgtgcttcgtgccttttgtcagccttgcgcgggataatcgccgtcgc
ccgacgcctatgctctaccacagaaccaatgccgatggcgcgcaggaactggtgtgggat
ttagagggcacggatgaaggttgggaacaggcaaagcaggaaaccttagccgaagatctg
cgtctgctctatgtagcgctcacccgccccgtgtacctgtgttatttgtatatcgctaac
catagtcgcatgttaaaggcggggcttaagagccagctgcatgaaaccgccatcggttat
ctgcttgggatcactgacacagattgtgatttttcccgtctgcaacatgccgccaaagcg
ctggtcgcgggtctcgaggcgagtcaacctgcgatcagcattgaggtagtggccgacgac
attgcggctaacaagctgcatacggggggaagtgattctcaaaccttgagtgcccgtaag
gtcagccgtcagtatcgcactccatggcgcgtcggcagttattccggcttagttaaaaat
gcgccccacgctaaagccactcctggtgccgatgatgaagtgaatgccgtattgggcacc
gatacaacaaacagctctattgaccccttgtggcaagaagcagatccacagcaagcacaa
cctctgctcaatcgctttagttttgagcgcggcgccaacgcgggtagctttatgcactta
gtgcttgagttaattgattttacccaagctcaaatcgacttaccccgagagctacctaag
gccatgttgcaatacggcattgcccccgaatggcagcccgtattagaggattggtatctt
gaggtattacaagcaccactggcattaatggcgcaggataatcagcttatcaatcccgag
ctgtgtttagccgcactcgcgccgcagcacaccttagttgagatggagttttacctgcct
ctgaatcgcttaaaggacacagagcttaatcaactccttgggcaatttggctacgatacc
gagctgcagtttgacgaattacagggcatgctcaagggctttatcgacttaacctttgaa
tatcaaggcaagttttatattgccgactataagtcaaaccatctgggggataatattcaa
gcctatcatcatagcgcgctgaaacaggcgatcagcgaccataggtatgatttgcaatat
atcctctactcccttgcgctacaccgctatttagcgatgcgcttgcccaattatgattac
gatacccatattggcggctgttattatttgtttttacggggaatgtcggtgcaatatcca
ggctttggtatttattacgataaaccacccaaggcgcttattttggccttagatgcgttg
tttcagcacagcctagagacaagcacagtgaatcaacaggatacgggagcaatggcatga
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