Shewanella bicestrii: CF168_15080
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Entry
CF168_15080 CDS
T05197
Name
(GenBank) RNA polymerase sigma factor RpoS
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
sbj
Shewanella bicestrii
Brite
KEGG Orthology (KO) [BR:
sbj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbj03021
]
CF168_15080
Transcription machinery [BR:
sbj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CF168_15080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Put_DNA-bind_N
Motif
Other DBs
NCBI-ProteinID:
ASK70070
UniProt:
A0A220UPZ5
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All DBs
Position
complement(3445992..3446972)
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AA seq
326 aa
AA seq
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MSRINSTAAEELVDFSVDTAEFDLDKEDIAADLVQELGLEQQVQDDLQKNLDATQLYLGE
IGFSPLLSAEEEVYFSRKALKGCEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGN
LGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARE
LAQKLDHEPTAEEIAEKLQVSSVDVSRMLKLNEKITSVDIPLGGDNDKALLDVLADDDNV
GPDYKVQDEDISNSVVKWLNELNTKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQ
IQVEALKRLRDLLGAQGLSVEALFRN
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcataaatagcactgccgcagaagaactagtagatttttccgtagataccgca
gagtttgatctcgataaagaggatattgccgctgatttagttcaagaactaggactcgaa
caacaggttcaagatgacctgcaaaaaaatcttgatgccactcagctctatttaggtgaa
ataggattttccccactgcttagcgcagaagaagaagtttacttttcccgtaaggcctta
aaaggctgcgaaaaatcccgtaatcgcatgattgagagtaacctgcgactcgtggttaaa
attgcccgtcgttacaataatcgcggcctagcgctgctggatttaatcgaagagggtaat
cttggcttgatccgtgcggtggaaaaattcgatccagaaagaggcttccgtttctcaacc
tatgcgacttggtggatcagacaaacgattgaacgtgccatcatgaatcaaacccgcacg
attcgcttgccaatccatgttgtaaaagaactcaacgtgtatttacgtacggctcgggaa
ttagcgcaaaaacttgaccacgaacctacggcagaagaaattgccgaaaaactgcaagta
tccagtgttgacgtcagccgtatgctgaagctcaatgagaagatcacctctgtcgatatc
cccttaggtggcgataacgacaaggcgttactcgatgtgctggccgatgacgacaacgta
ggccctgactacaaagtacaagatgaagacatttcaaactcagtggtgaaatggcttaat
gaactcaataccaagcaaagagaagtgttagcgcgccgctttggtttgttaggttatgaa
ccctcaacccttgaagacgtcggtgctgaaattggcctcacccgtgaacgtgttcgccaa
attcaagtggaagccctaaaacgcctacgtgatttgctgggcgctcaaggtctctctgta
gaggcactctttagaaactaa
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