Shewanella bicestrii: CF168_16715
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Entry
CF168_16715 CDS
T05197
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sbj
Shewanella bicestrii
Pathway
sbj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CF168_16715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbj03019
]
CF168_16715
Enzymes [BR:
sbj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CF168_16715
Messenger RNA biogenesis [BR:
sbj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CF168_16715
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
LUZP2
AAA_22
DUF8086
Motif
Other DBs
NCBI-ProteinID:
ASK70361
UniProt:
A0A220UQZ7
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All DBs
Position
3826832..3828481
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AA seq
549 aa
AA seq
DB search
MSFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL
ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL
RHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQ
NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQ
ENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVAT
DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRDIER
LINRVLERQEVEGFSPVHALPESTLNAHGKENKIKAVASQRKHRSAGKPSPRAGTGRDGR
KTPDSSDGAAQQKNSNPNQGQRNNQGQHKRPQAAKNAEHKNTHSGTEAGRTPKPQDKRPQ
RGKGPANSEHKAKGQPHSAAQQLSPQARSEKQHSDSRRQGRAQSTANSANGEHKKPSHRP
DNRPNRVKS
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcctccctaggtttatctgcaccgatccaaaaagccgtgactgaacaaggt
tatgacacaccctctcctattcaagcacaggcgattcccgccgtactgacgggtaaagac
gtgatggctgcggcccaaacggggacaggaaaaaccgcaggctttaccctgccgttgctc
gaattactctctaaaggcaataaagccaaggcgggacaaatccgcgccctagtgctaacc
cccacgcgcgagttagcggctcaagtaagcgaaagcgttgaaacctatggtaaatatctg
ccattgcgctcagcggtcgtctttggtggcgtgccaattaatccccaaattcaaaagcta
cgccacggggtagatgtactggtcgccacacctggacgattattagatcttgagcagcaa
aaagcggtgaagtttaatcaactcgaagtcttagtgctggatgaagcggatcgcatgctc
gacatgggttttatccgcgatatcaaaaagatcctcgccatgttgcccgctaaacgacaa
aacctgatgttttcggcgaccttctccgatgaaatccgcgagctggccaaaggcctagtg
aatcaaccagtagaaatttcagttacgccacgcaacgccgcggcaaacacagtcaaacaa
tggatttgccccgtcgataagaatcaaaaatcggcgctgctaattcagctcatcaagcag
gaaaactggcagcaagtcttagtgttttcacgcactaaacacggcgccaacagactggct
aagagtcttattcaagccgagatcagcgccgccgctatccacggcaacaagagccaaggc
gcacgcaccaaagccttagccgactttaagagtggcgaagtgcgcgtgctagtggcgacc
gatattgcggcgcgcgggctcgatatcgaccaattaccacaagtagtgaacttcgatctg
cccaatgtccccgaggattacgtacaccgcattggccgcaccggccgtgctggcgcctta
ggccaagccgtatccttagtcagtagcgaagaaactaagctgctcagggacatcgagcgt
ttgatcaatcgcgtgcttgaaaggcaggaggttgaaggcttcagccctgtgcatgcgctc
cccgaatcgaccttgaatgcccatggtaaagagaacaaaatcaaagccgtggcgagccaa
cgtaagcatcgcagcgcgggtaaaccctcgccaagagccggtacaggccgcgatggtcgt
aaaacgccagacagcagcgacggcgctgcgcagcaaaagaactcaaatccaaaccaaggc
cagcgcaataatcaaggccagcataagcgtcctcaagcggcaaaaaacgctgagcataaa
aatacgcactcaggtaccgaagctggccgcacgcccaaaccacaggataaacgtcctcaa
cgcggcaaaggcccggctaatagcgaacataaagccaaaggccagcctcattcagcggcg
caacaacttagcccacaagctcgcagcgagaaacaacattctgactcacgccgccaaggc
cgcgctcagtcgacggctaattccgccaacggtgagcacaaaaagccttcgcatcgaccc
gataaccgccctaatcgcgtaaaatcctaa
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