Shewanella bicestrii: CF168_17310
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Entry
CF168_17310 CDS
T05197
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sbj
Shewanella bicestrii
Pathway
sbj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CF168_17310 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbj03019
]
CF168_17310 (rnr)
03016 Transfer RNA biogenesis [BR:
sbj03016
]
CF168_17310 (rnr)
Enzymes [BR:
sbj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CF168_17310 (rnr)
Messenger RNA biogenesis [BR:
sbj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CF168_17310 (rnr)
Transfer RNA biogenesis [BR:
sbj03016
]
Prokaryotic type
tRNA degradation factors
CF168_17310 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
TFIIE_beta
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
ASK70474
UniProt:
A0A220UQH0
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All DBs
Position
complement(3952034..3954463)
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AA seq
809 aa
AA seq
DB search
MIKDPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAVALQIHDEEQLEALRRRLR
AMERDGELVFTRGQSYGLPEKMDLISGTVLGHREGYGFFKPDEGGDDLFISNRDMLMYFH
GDKVLAQKAGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIAT
EDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAV
IEKKLRRIPDEVTEADKVGRVDLRDLPLVTIDGEDARDFDDAVYAQVKPSGGWRLWVAIA
DVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTIS
ARGKLSGYKFYPAVMHSHARFTYTQVAAMLEGGPIAPEHEALFPHLQCLQSLYLALDEQR
AERGAIAFETLETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKKHKGEI
LYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQVMLLR
SMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKGEANEKWTSDG
GYHYQLDELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTNFGLF
VRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQIYQVGDPVTVKVAAVNLDDRQI
DLVMLGDSGKGGRRKSAPSREKPMTARERVNREGAKMAKAAKSTGAKSKAGSDKAGASKS
KSKAGAKPKKSVKNSAKKPKAAKRSTRKK
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagaccctcatttcgagcgtgaacaggataagtacgaaaaccctatcccaagt
cgtgagtatattatcgagtacttacgttctcaaaaatcacctattacccgtgacagcatt
gctgttgcactgcagatccacgatgaagaacagttagaagccctgcgtcgccgtttacgg
gcgatggagcgtgacggtgaactggtatttacccgcggtcaaagctacggcttacctgaa
aaaatggatctgatttccggcactgtccttgggcacagagaaggctatggcttctttaaa
cctgacgaaggtggcgacgatttatttatctcaaatcgcgacatgctgatgtatttccat
ggcgataaagtactggcacaaaaagccggtatggaccgtaaaggccgccgcgaggcccgt
atcgttcgcttgatccaacctcgcagtgccgccattgtggggcgattccatgtcgacagt
ggcatggcatttgtgattgccgatgataaacgcattacccaagaaatcttaatcgccacc
gaagatcgcaatggcgcccgtcaaggcgatgtggtcgtggttgaattaacccgtcgtcca
ggccgattcgttaaagctgccggtaaagtcactgaagtgctcggcaagcaaatggcgccg
ggaatggaaatcgaaattgccctgcgtaattacgatttaccccacacttggtcggcggtg
attgagaaaaaactgcgccggatccccgatgaagtgaccgaagccgataaagttggccgc
gtcgatctgcgagatctgcccttagtgaccatcgatggcgaagatgcccgcgactttgac
gatgcggtatatgctcaagtcaaacctagtggtggatggcgtctgtgggtggcgattgcg
gatgtgagctactacgtgcgtaccgattcggccttagataccgaagcccgtgcccgtggt
aactctgtgtatttcccgtcgcaagtgatccctatgctgccggagaaaatctctaacggc
ctgtgttcgcttaatccccatgtcgaccgcttgtgtatggtcgcagagatgacgatttcg
gcccgcggtaagctttctggttataagttttatcccgcggtgatgcattcacatgcgcgc
ttcacttatacccaagtggcagccatgctcgaaggtggaccgattgcgccagagcatgag
gcgctattcccgcatctgcaatgtttgcagtcactctatttagcgctcgatgaacaacgc
gccgagcgtggtgcgattgcctttgagaccttagaaacgcagtttatttttaacgaccag
cgcaagatcgataagattgtgccaagagcgcgtaatcaagctcataaaatcattgaagaa
tgtatgattttggccaacgtatcggccgctaagtttgtgaaaaagcacaagggtgaaatc
ctctatcgcgtgcatgagtcgccctctgagcagaagctggcaaactttaaagagtttctg
gccgaacgtggtttaagcatgggcggtggacttgagccaacgcctgcggattaccagaat
gtgatgctgcaaatcgccgatcgccccgatgccgagcttattcaagtgatgttgctgcgc
tcaatgcgccaagctatttatacacctgataacgaaggtcattttggtttagcactcgaa
gaatatgcgcacttcacctcgcctattcgccgttatcctgacttagtgcttcaccgcgtg
atccgctatttattggcgaaggaaaaaggcgaagccaatgaaaagtggacatccgatggt
ggctaccattatcagctcgatgagttggatctcttaggcgaagaatgttcgaacaccgag
cgccgtgccgatgaagcgacgcgtgatgtaagcgactggttgaaatgtgaatttatgcag
gaccatgtgggtgacaccttcgaggcggttattgcctctgtcactaactttggtttattc
gttcgcttaaatgacttatttatcgatggcttagtgcatatttctagcctgggtagcgat
tattaccagttcgatcctatgcgtcagcgattgattggtgagcacacgggtcaaatctat
caagtgggtgatcccgtcacggtaaaagtggccgcggtaaacttggatgatagacagatt
gacttagtcatgctcggcgacagcggaaaaggcggtcgccgtaagtctgcgccaagtcga
gaaaaaccgatgacggcacgtgagcgggtaaaccgtgaaggcgccaaaatggctaaggcg
gctaaatcgacaggcgcgaaatcgaaagccggttcagataaagctggggcgagtaagtcc
aagtctaaagcaggcgctaagcctaagaaaagcgtaaaaaattcggcgaaaaagccaaag
gccgcgaagcggagcacgagaaagaagtaa
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