Shewanella bicestrii: CF168_17975
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Entry
CF168_17975 CDS
T05197
Name
(GenBank) RNA polymerase-binding ATPase
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
sbj
Shewanella bicestrii
Brite
KEGG Orthology (KO) [BR:
sbj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbj03021
]
CF168_17975
Transcription machinery [BR:
sbj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
CF168_17975
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
ApoC-I
Motif
Other DBs
NCBI-ProteinID:
ASK70599
UniProt:
A0A220UR13
LinkDB
All DBs
Position
4102900..4105806
Genome browser
AA seq
968 aa
AA seq
DB search
MPFALGQRWISDTESELGLGTVVQVEGRMVTVLFPATGENRMFSRNEAPLTRVIYNPGDT
VESHEGWSLSVEELTEKDGLVVYHGIHSETGEKVSLRETLLNHNIRFNKPQDRLFAGQID
RLDRFGIRYQCQLLRHQLATSDLLGLQGPRVGLIPHQMWIAHEVGRRYAPRVLLADEVGL
GKTIEAGLIIHQQLLTGRAERVLIIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAFAD
HDNPFYTEQLVICSLELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRAYQVVEAL
SEVVPGVLLLTATPDQLGHESHFARLRLLDPDRFYDYDAFLAEENSYKDVAVAAEALAGD
AKLSDAAINSLTELLSEKDIAPSIRLIQAEDIDSELQQAARSELLQELLDRHGTGRVLYR
NSRASVKGFPKRIFNAYPHAMPEQYLTAARVNEMMGGRKTLEAKAAQALSPEKLYQEFED
NSASWWKFDPRVDWLIEFLKSHRSKKVLIIASGADTALSLEEALRTREGIQATVFHEGMS
IIERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDR
IGQKNDIQIHLPYLQDTAQERLLNWYHQGLNAFELTCPSGHVLYSEFAEDLLNVLVGGDE
DELTNLLNHTQSRYKELKHAMEQGRDKLLEINSHGGDKAKAIVERLAQSDQDTKLIGSVI
RLWDIIGVDQEDKGENSIILRPSEHMMFPTYPGLHEDGVTVTFDRDTALSRDDIALITQE
HPLVQTGLDLITGSDTGTTSVAILKNKALPAGTLFLELIYMADASAPKSSQLYRYLPPTP
IRVLLDKNGNDLSAKVDYTSFDKQLSAVNRHIGSKLVTASQPILHPLFAKGEEYAQAAVN
ELVAQAREKMTSQLTGELDRLESLKAVNPNIREEELEYLRNQMQELSTYLDASQLQLDAI
RMVLVSHV
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccgtttgccttaggacaacgttggataagtgataccgagtcagaacttggtttagga
acagtcgtacaagttgaaggccgtatggtcacagtgttattccctgcgactggtgagaac
cgtatgttctcgcgcaacgaagcccccctgacccgtgtcatatacaaccctggcgatacg
gttgaaagccatgaaggctggagcctctcggttgaagaactcaccgaaaaagacggcctc
gtcgtctaccacggtatccacagcgaaacaggtgagaaagtcagcctgcgcgagaccctg
ttaaaccacaacattcgctttaacaaaccgcaagatcgcctgtttgctggtcagattgac
cgcctagaccgtttcggtattcgttaccaatgccagttactgcgtcatcaactggcgacc
tcagatttactcggcttacaaggtccacgcgtcggccttatcccccaccagatgtggatt
gcccatgaagtgggtcgccgttatgcgccgcgtgtattgctggccgacgaagtgggttta
ggtaaaaccatcgaagcgggtctgataatccatcaacaactgctcactggccgcgccgag
cgggtgctgattattgtgccggataccctgcgccatcaatggttagtggaaatgctgcgc
cgctttaacctgcgcttctcggtatttgatgaagaccgttgtgtcgaggcctttgccgac
catgacaatcctttctacaccgagcagttagtgatttgttccctcgaattactgcgtaaa
aagaaacgtctcgaccaagcactcgatgccgactgggatctgctggttgtcgacgaggct
caccacttagagtggaccgaagaagccccgagccgtgcctaccaagtggttgaagcattg
agcgaagtagtacctggcgtattgttattaacggcaacgccggatcaactcggccatgag
agccattttgcgcgcctgcgtttgctcgacccagatcgtttctacgactacgatgccttc
ctcgccgaagaaaacagctacaaagatgtcgccgttgccgccgaagccttagcgggcgac
gcaaaattatccgatgctgccatcaacagcctcaccgaattactcagcgagaaagacata
gcgccgagcattcggttaattcaagccgaagatatcgacagcgagttgcaacaagcggcc
cgcagcgaactgctgcaagagttactcgatcgccacggcacaggtcgcgtgctgtatcgc
aacagccgcgcctcggtaaaaggtttcccgaaacgtattttcaacgcctatccccatgca
atgcctgagcagtatcttaccgctgcccgcgtaaatgagatgatgggtggtcgtaagacc
ttagaagcgaaagcggctcaagcccttagccctgaaaaactctaccaagaatttgaagat
aacagcgccagttggtggaagttcgatcctcgcgtggattggttaatcgagttcttaaag
tcgcaccgcagcaagaaagtgctgatcatcgccagtggcgccgataccgccctgagctta
gaagaagccctgcgtacccgtgaaggcatccaagccaccgtattccacgaaggcatgtcg
atcatcgagcgcgacaaggcgggtgcctacttcgctcaagaagaaggcggcgcccaagcg
ctgatctgttcagaaatcggctccgaaggtcgtaacttccagtttgccagccacttagtg
ctgttcgatctgccattaaacccagatttattagagcaacgtatcggccgtttagaccgt
atcgggcagaagaacgatatccaaattcacctgccttatctgcaagatacggcgcaggag
cgtctgctcaactggtatcaccaaggtctgaatgctttcgagctgacctgtccaagtggc
catgtgctgtacagtgaatttgccgaagatctattgaatgttctcgtcggtggggatgaa
gatgagctaaccaatctgctcaaccacacccaaagccgttacaaagaactgaaacacgct
atggagcaaggccgcgataagctgctggaaatcaactcccacggtggcgataaagctaag
gcgattgtcgagcgtttagcccaaagcgatcaggacactaagctgattggttcggtgatc
cgcttgtgggacattatcggtgtcgatcaagaagataaaggtgaaaactctatcatcctg
cgtccaagcgaacacatgatgttcccaacctatccgggtctacatgaagatggcgtgacg
gtcaccttcgaccgtgataccgcgctctcccgtgacgatatcgccctgatcacccaagag
cacccgttagtgcagacaggcttagatctgatcactggctctgacacaggcacgacgagc
gtcgcgattttgaaaaacaaagccttacccgcaggcaccctgttcttagaactgatctac
atggcggatgcctcggcacctaaatcgagccagttatatcgttatctgccaccgacgcct
atccgcgtactgctggataaaaacggcaacgatttatctgctaaggtggattacaccagc
tttgacaaacagttaagcgcggttaaccgccatattggcagcaagttagtcacagcatcc
caaccgattctgcatccgttatttgctaagggtgaagaatatgcccaagccgcagtgaac
gagttagtggcgcaggcgcgtgagaaaatgaccagccaactgacgggcgaattagaccgt
ttagagtccttgaaagcggttaacccgaatatccgtgaggaagagttggaatacctgcgt
aatcaaatgcaggaactgagcacttacctcgacgcaagtcagctacagctcgacgcgatt
cgtatggttttggttagccatgtctaa
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