Shewanella bicestrii: CF168_18480
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Entry
CF168_18480 CDS
T05197
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sbj
Shewanella bicestrii
Pathway
sbj03420
Nucleotide excision repair
sbj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CF168_18480
03430 Mismatch repair
CF168_18480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbj03400
]
CF168_18480
Enzymes [BR:
sbj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CF168_18480
DNA repair and recombination proteins [BR:
sbj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CF168_18480
MMR (mismatch excision repair)
Other MMR factors
CF168_18480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
ASK70695
UniProt:
A0A220URD0
LinkDB
All DBs
Position
complement(4218791..4220959)
Genome browser
AA seq
722 aa
AA seq
DB search
MDVFSLLDGLNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV
TFTNKAAAEMRERVEKVAGTNMGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQV
RLLKRILKSLNLDEKQYPPRQAQAYINGKKDQGLRPKHIDAGGFPIEQNLLKIYQVYQES
CDRAGLVDFAEILLRAHELWLNKPHLLAHYQERFKHILVDEFQDTNAIQYAWIRVLAGQT
ANVMIVGDDDQSIYGWRGAQVENLHRFLRDFPTATTIRLEQNYRSKGNILKASNALIANN
PERLGKELWTDEADGEPISLYCAFNEMDEARFIVGRINDWYEKGGNLSDCAILYRSNAQS
RVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKNDDAAFERVVNTPPRGIGD
RTLDILRSTARQQELTLWQACLRLLDEKVLAGRAASAVRGFMDLIVTLQEETQDMALYRM
TDTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMPEELEDMGELNAFLSHAAL
EAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPSKMALEEGDRLDEERRLCY
VGMTRAMEKLYITYAESRRIYGREDYARPSRFIKEIPPQYVDEIRLKAQVSTPMANNRFS
AQKSAVANDTGFSVGQRVHHPKFGDGKVTNFEGSGAQARVQVNFSDFGSKWLVVAYARLE
AR
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggacgtattttctttactagacggcctgaatgataaacagcgcgaggctgtcgcggca
ccgcaatccagcatgttagtgcttgcgggcgcaggcagtggcaaaacgcgagtattaacc
caccgtatcgcgtggttaatgcaggtcgaacagcagagcccttactcaattttagccgtg
acgtttaccaataaagccgcagccgagatgcgtgagcgggtggagaaggtcgctggcacc
aatatggggcggatgtggattggtaccttccacgggttagcgcatcgtctgttacgcact
cacttccaagatgcgggattaccgcaaagcttccaaattctcgattcggacgatcaggtg
cgcttgctgaaacgcatccttaaaagtttgaatctggatgaaaaacaatatcctccccgt
caggcgcaggcctatatcaatggcaagaaagaccaaggtttgcggcccaagcatatcgat
gcgggtggttttccgattgagcaaaacctgctgaagatttatcaggtttatcaagagtct
tgcgaccgggcaggtttagtcgactttgccgaaatcctgctgcgtgcccacgagctgtgg
ctcaataaaccgcatctgctggcgcattatcaggagcgttttaagcatattctggtggac
gagttccaggataccaacgccatccaatatgcgtggatccgtgtgttggccggccaaact
gccaacgtgatgatagtgggtgacgacgaccaatccatttatggttggcgcggcgctcag
gttgaaaacctgcaccgtttcctgcgggatttcccgacggcgactacgattcgcctcgag
caaaattatcgctccaagggcaatattttgaaggcatcaaacgcccttatcgccaataac
cccgaacgtttaggcaaagagttgtggaccgacgaagccgatggtgagccgatttccctc
tactgcgcctttaacgaaatggacgaggcgcgctttattgtcggccgtatcaatgattgg
tacgaaaaaggcggtaatttaagtgactgcgcgattttatatcgctcgaatgcccagtcg
cgtgtgctcgaagaagccttattacacaaaggcttagcctatcgtatttacggtggcctg
cgcttcttcgaacgccaagagattaaagatgctatgggttatatgcgtctaatcagcaat
aaaaatgacgatgccgccttcgagcgcgtggttaatacgccgccccgtggcattggcgat
cgcaccttagatattctgcgttcgaccgcccgtcagcaggaactcaccctgtggcaggct
tgtttacgtttgctggatgaaaaggtgctcgctggccgcgcagcctctgcggtacgtggc
tttatggatcttatcgtcaccctgcaggaagaaactcaggatatggcgctgtaccggatg
acggacacagtgatccaagcctctgggcttaaggccatgtacgaggcggaaaaaggcgaa
aaggcccacgcccgtatcgaaaacttagaggaactcgttaccgcagcgcgcaccttcgaa
atgccagaggagcttgaggatatgggcgagcttaacgccttcctatcccacgctgcctta
gaggcgggcgaaggtcaggccgatgcctttaccgatgccgtacagttgatgacactgcac
tcggccaaggggcttgagtttactatggtgtttatggcgggcgtcgaggaggggattttc
ccgagtaagatggcgctcgaagagggcgacagactcgatgaggaacgccgcctctgttac
gtgggcatgacccgcgcgatggaaaaactctatatcacctatgccgaatcccgccgtatt
tatggtcgcgaggattatgcccgtccatcgcgttttattaaggaaattccgccgcaatat
gtggacgaaattcgcttaaaagcgcaggtgtcaacgccgatggcgaataatcgcttcagt
gcgcaaaagtctgcggtcgccaacgatactggctttagcgtcggccaaagggtgcatcat
ccaaaatttggtgacggtaaagtgactaacttcgaaggcagtggcgcacaggcgcgagtg
caggtgaattttagtgattttggcagtaagtggctggtggtcgcctacgcgcgtttagag
gcgcgttga
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