KEGG   Shewanella bicestrii: CF168_18775
Entry
CF168_18775       CDS       T05197                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
sbj  Shewanella bicestrii
Pathway
sbj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sbj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CF168_18775 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sbj03021]
    CF168_18775 (rho)
   03019 Messenger RNA biogenesis [BR:sbj03019]
    CF168_18775 (rho)
Transcription machinery [BR:sbj03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     CF168_18775 (rho)
Messenger RNA biogenesis [BR:sbj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CF168_18775 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 NACHT AAA AAA_25 Spore_III_AA S1CSD-TOTE-2
Other DBs
NCBI-ProteinID: ASK70748
UniProt: A0A220URC1
LinkDB
Position
4294159..4295424
AA seq 421 aa
MNLTELKDTPISDLVSLAENMKLENMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQD
GFGFLRSADGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVNEVN
FDKPENSRNKILFENLTPLHAEERMRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPP
KAGKTLLLQNIAQSITYNNPEVVLMVLLIDERPEEVTEMQRLVQGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNIENGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF
NRSGTRREEKLTTPDELQKMWILRKILNPMDEVSAMEFLIDKLAMTKTNEEFFTAMKRAK
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaacttaactgaattaaaagacacgccgatatccgacctagtctcgctagccgaaaac
atgaaactcgaaaatatggcccgcgctcgcaagcaggacattattttctctattcttaaa
gcccacgccaaaagcggcgaagacattttcggtggcggtgtattagaaatcctccaagac
ggattcggtttcttacgtagtgcagatggatcttacttagctggcccggatgatatttat
gtatcaccaagccaaattcgccgctttaacatgcgaacgggcgacaccatttttggcaaa
attcgcccaccaaaagaaggtgaacgttattttgccctgctaaaagttaacgaagttaac
ttcgataaacctgaaaactctcgcaacaaaatcctctttgaaaacttaaccccactccac
gcagaagaacgtatgcgtatggagcgtggtaatggctctactgaagacatcacagcccgt
attctggatttatgctctcctatcggtaagggtcaacgcggtctgatcgtcgcgccacca
aaagcgggtaaaaccttattactgcaaaatattgctcagtcaatcacctacaacaaccct
gaagtggtgttgatggtactgctgatcgatgaacgtcctgaagaagtgaccgagatgcaa
cgcctagttcaaggcgaagtgattgcatcaaccttcgacgaaccagccagccgtcacgtg
caagtggctgaaatggtcattgaaaaagccaagcgtttagttgagcacaagaaagacgtt
gtgatcctactcgactctattacccgcttggctcgcgcctataacaccgttatcccatca
tcgggcaaagtgttaaccggtggtgtggacgcaaacgccctacaccgtcctaagcgcttc
ttcggtgcggctcgtaacatcgaaaacggcggcagcttaaccattattgctaccgctctg
gttgataccggctcgaaaatggacgaagtgatttacgaagagttcaaaggtacaggtaac
caagaattgcatctgtcacgcaaggccgctgaaaaacgcgtcttccctgcgattgacttc
aaccgcagtggtactcgtcgcgaagaaaaactgactacgcctgatgagctgcaaaagatg
tggatcctgcgtaagatcttaaatccaatggatgaagtcagcgcaatggaattcctgatc
gacaaactggcgatgactaagaccaacgaagaattcttcaccgcgatgaaacgcgctaag
tcttaa

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