Shewanella benthica: SHEWBE_0227
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Entry
SHEWBE_0227 CDS
T06707
Name
(GenBank) AMP-binding protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sbk
Shewanella benthica
Pathway
sbk00061
Fatty acid biosynthesis
sbk00071
Fatty acid degradation
sbk01100
Metabolic pathways
sbk01212
Fatty acid metabolism
sbk02024
Quorum sensing
sbk04146
Peroxisome
Module
sbk_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
SHEWBE_0227
00071 Fatty acid degradation
SHEWBE_0227
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
SHEWBE_0227
09145 Cellular community - prokaryotes
02024 Quorum sensing
SHEWBE_0227
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sbk01004
]
SHEWBE_0227
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sbk04147
]
SHEWBE_0227
Enzymes [BR:
sbk01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
SHEWBE_0227
Lipid biosynthesis proteins [BR:
sbk01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
SHEWBE_0227
Exosome [BR:
sbk04147
]
Exosomal proteins
Exosomal proteins of breast milk
SHEWBE_0227
Exosomal proteins of breast cancer cells
SHEWBE_0227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
SH3_1
Motif
Other DBs
NCBI-ProteinID:
SQH74223
UniProt:
A0A330LYH6
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All DBs
Position
SHEWBE:209416..211074
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AA seq
552 aa
AA seq
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MESQIKTPVEMLDYWVDTLGDSTYLRQPINGQYQDFSWREVQQKMQQLAGALRHLGLKPG
DKIAVLSKNCAEWFITDLALMHGGYISVPIYPTANADTIRYVLEHSEAKAIIIGKLDYWA
DQEAGVGGNILRMAMPYDTMPAQYKWQSLLQLGEPLLDAPFATPEQIMTLIYTSGSTGKP
KGAIQTFASYVWTSKAVVRDLKTGVDDRLISYLPLAHITERVAMEGSSFYSGSSVAFVES
LDSFVADVQRARPTVFFSVPRLWSLFQQNIIGKIGKSKLNLLLKIPIISGIIKKKIHAGL
GLEHCRLLGSGSAPIPPSLIHWYHSIGLNISEAWGMTENSAYSIINYPFDASKIGTVGRA
VEGCLIKQTDSGELLVKSPGLMTGYYKQDELTAASFDEEGYFRTGDLCTIDSDGYVSITG
RIKDNFKTSKGKYVAPVPIERKLAQDPHIELLCVIGSGLPHPIALVLLSEGASLQPREEV
RSSLKATLDTINPNLESHETVDAIIVVKDTWDVENDVLTPTLKIKRHVLEKRFTDKVDGI
RGGKIRWEDEID
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggaatcacagatcaaaacacctgtagagatgctcgactactgggtcgacacactaggt
gactccacctacctgagacaaccaatcaatggccaataccaagattttagctggcgcgaa
gtgcagcagaagatgcagcagctcgccggtgcgctgagacacttaggcctaaaaccaggt
gataaaatcgccgtgctctctaaaaactgtgccgaatggtttattaccgatcttgccctg
atgcacggcggttatatcagtgtgcccatctacccaacggccaacgcagataccatacgt
tacgtgttggagcacagcgaagccaaggccatcattattggtaagctagattactgggcc
gatcaagaagctggggttggcggcaatatcttgagaatggccatgccctacgacactatg
ccggctcaatataagtggcaaagcttactgcaacttggagaacccctgttagatgcccca
tttgccaccccagagcagataatgacactgatctatacttccggctccaccggcaagcct
aagggtgcgattcaaaccttcgccagctatgtctggaccagtaaggcggtggtaagagac
cttaagacaggtgtcgatgaccgattaatctcttacctgcctctggcccatatcaccgag
cgcgtggcgatggaaggctcatcattctactccggcagcagcgtcgccttcgtcgaaagt
ttagatagtttcgttgccgatgttcaacgtgccagacccacggtgtttttctcggtccct
aggctctggagcctgttccaacaaaatattatcggtaaaataggcaagagtaagctgaac
ttgctgcttaaaattcctattatcagcggcatcatcaagaagaagatccatgcaggcctg
ggcctggagcattgtcgcctgctgggatctggctcagcgcctattccaccatcactcatt
cattggtatcacagtatcggcctcaatatcagtgaagcctggggaatgacagaaaatagc
gcctactccatcatcaactatcccttcgatgccagtaaaatcggcacagtcggccgcgct
gtcgaaggttgcctaatcaagcaaaccgacagcggcgagctgttggtaaaaagcccgggc
ctgatgacaggttactataagcaagatgagctgaccgcggcctcattcgatgaagaaggt
tacttccgcaccggagatctgtgcaccatcgacagcgatggttacgtatcaattaccggt
aggatcaaggataactttaagacctctaagggtaaatatgttgcccccgtgcccatcgag
cgcaagctggcacaagatccccatattgagctactttgtgtcataggttcaggcctgcca
caccccatcgccttagtactgctctcagaaggtgcgtctctgcagcccagagaagaggtt
cgtagttcactcaaggcgacgctggacactatcaaccccaatcttgaatcccatgagacg
gttgatgccatcatagtcgtcaaagacacctgggatgtcgaaaacgatgtgctgactcca
acactgaaaattaaacgtcatgtactggaaaaaagattcactgacaaggtcgacggcata
cgtggcggcaagatacgctgggaagatgaaatagactag
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