Shewanella benthica: SHEWBE_0299
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Entry
SHEWBE_0299 CDS
T06707
Symbol
rpoA
Name
(GenBank) RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sbk
Shewanella benthica
Pathway
sbk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SHEWBE_0299 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbk03021
]
SHEWBE_0299 (rpoA)
03400 DNA repair and recombination proteins [BR:
sbk03400
]
SHEWBE_0299 (rpoA)
Enzymes [BR:
sbk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SHEWBE_0299 (rpoA)
Transcription machinery [BR:
sbk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SHEWBE_0299 (rpoA)
DNA repair and recombination proteins [BR:
sbk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SHEWBE_0299 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
SQH74291
UniProt:
A0A330LWM6
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All DBs
Position
SHEWBE:complement(273789..274778)
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AA seq
329 aa
AA seq
DB search
MQGSVTEFLRPRLVDIEQVNPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSSKEGVQEDILEILLNLKGLAVVIEGKDEAMLTLSKSGAGPVTAADITHDGD
VTIMNPEHVVCHLTGNNEISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDASFSPVA
RIAYTVEAARVEQRTDLDKLVIDMTTNGTLDPEEAIRRAATILAEQLDAFVELRDVTEPE
QKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASLVDDL
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttacagaatttcttagaccgcgtctcgttgatatcgagcaggttaat
ccaacacgtgccaaagttacacttgagccgcttgaacgtggtttcggtcacactttaggt
aacgcgttgcgtcgtatcctattgtcgtctatgccaggctgcgcggtaaccgaagtagag
attgatggtgtactgcatgaatacagtagcaaggaaggcgtgcaagaagatatccttgag
atcctgctaaaccttaaaggtttagcggtagtgatcgaagggaaggacgaagctatgctt
actttaagtaagtcaggcgcaggccctgttaccgcagcagacatcacccatgatggtgat
gttacaatcatgaatcctgagcatgttgtctgtcatttgacaggtaacaatgaaatcagc
atgcgtatccgtgtagaacgtggtcgtggttatgtaccggcttctgcccgtgcacaaacc
gaagacgatgatcgtcctattggtcgcttgttggtcgatgcttctttctcgcctgttgct
cgtatagcctatactgtagaagctgcacgtgttgaacagcgcactgacttagataaactc
gttatcgatatgaccacaaacggtactctcgatcccgaggaagctatccgtcgtgccgca
accatcttggctgaacagctagatgcgtttgttgaactacgtgatgtcactgagccagag
cagaaagaagagaagccggaattcgatccgattctgttgcgtcctgtggacgatttagag
ctaactgtacgttcagctaactgtttgaaagctgaggcgattcattatatcggagatctg
gtacagcgcactgaagttgagctgcttaagacacctaatttaggtaagaaatctcttact
gaaattaaggatgttttggcttctcgcggactgtcgttgggtatgcgtctagaaaactgg
ccaccagccagcctagtcgacgacctttaa
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